PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP031052.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family RAV
Protein Properties Length: 303aa    MW: 34390.3 Da    PI: 9.2063
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP031052.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-113179155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGV    ++grW A+I++      + r++lg+f  +eeAak +  a +k++g
  PCP031052.1 31 SRYKGVV-PQSNGRWGAQIYEK-----SHRVWLGTFNEEEEAAKTYNVALLKFRG 79
                 78****7.7779*********4.....6**********************99997 PP
2B3901.8e-28165266197
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+kv tpsdv++++r+v+pk++ae+h       g    +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+ +  ++++
  PCP031052.1 165 FEKVATPSDVGRLNRMVIPKQHAEKHfqvhlsvG--FGKGVLLKFEDELGKVWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKAGDVVRFQKSVGEDKK 260
                  89************************88887652..237899************************************************55448888 PP

                  .EEEEE CS
           B3  92 lvvkvf 97 
                  l++  +
  PCP031052.1 261 LFIECR 266
                  888766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MDLMSCWNAS TSDYSTMNGA NGASSNKLPS SRYKGVVPQS NGRWGAQIYE KSHRVWLGTF  60
NEEEEAAKTY NVALLKFRGL DAITHFSRSQ MKPYGPDVTE ALFLEYHSKA EIVDMLRKHA  120
YTNELEMYKH KLHNGGALGL DDGGKRTKCY LDLMDTCSRD RELLFEKVAT PSDVGRLNRM  180
VIPKQHAEKH FQVHLSVGFG KGVLLKFEDE LGKVWRFGYC YWSSSQSYVL SKGWIRFVKE  240
KKLKAGDVVR FQKSVGEDKK LFIECRPRKV DVSGIEEMHG RVADPLATVQ DDGVVRLFGV  300
NIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.12e-99RAV family protein