PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030997.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 579aa MW: 65812.8 Da PI: 5.0926

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030997.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4.1e-08	354	407	1	46
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqk 46 r +WT eE + l+++v+ G+ +Wk+I ++ k+R + ++k++w+ PCP030997.1 354 RSKWTDEEIKMLKEGVRVCGTSngkmQWKKILEYGHkvfhKTREPVDLKDKWRR 407 789***************99********99**************85 PP
2	Myb_DNA-binding	27.4	7.9e-09	517	571	1	47
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 r+ WT eE + l+++v+++G+ +Wk I ++ +R + ++k++w+ y PCP030997.1 517 RLDWTDEELKMLKEGVRLYGTSngkmQWKEILEHGHnvfhVTRQPVDLKDKWRRY 571 789***************99********99***************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MGVEESVELD GLLEVENCVK CEDGGSGSRK LLVCSEKGCP IALHEECMCA RPVFDQLGKF 60 YCPYCAYKRE FFRCRELGRK VMVSKSVLSK FIDAGEGEDC GCEEGGRGGV EVRGQSVGVE 120 GGGAAEGGTD QRREIEDVRG DESIDEDPDE EEIVEETQEE DAEPRETMNN DNARDGLDRK 180 DEEDCLRVSK ESKGGSDDEE QEEEAEPQSG CCVQEMTNNH NAHGLLDQRD EGDGKRVPEE 240 NEGESEDEEQ MQSVEKEVPG NSTVVSESDE LDTGSPLVRK KRFKQKSKRI KQPQNVASLR 300 TVPSPSRESS SRQTRSAEEH AKNQNGKAKT FSKKERENQE SARNLVFPNV KGKRSKWTDE 360 EIKMLKEGVR VCGTSNGKMQ WKKILEYGHK VFHKTREPVD LKDKWRRSLG KENKDNAHDG 420 FDQRDEEDGI RLSEENEGES EDKEQIRSVE KEAPGKSTVD SKSEKLDTGS PLVRSKQLKQ 480 KAKTKEQPPN AKTFSKRERE IQESSRNLVL PNGKRKRLDW TDEELKMLKE GVRLYGTSNG 540 KMQWKEILEH GHNVFHVTRQ PVDLKDKWRR YFCEKARKR

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MGVEESVELD GLLEVENCVK CEDGGSGSRK LLVCSEKGCP IALHEECMCA RPVFDQLGKF  60
YCPYCAYKRE FFRCRELGRK VMVSKSVLSK FIDAGEGEDC GCEEGGRGGV EVRGQSVGVE  120
GGGAAEGGTD QRREIEDVRG DESIDEDPDE EEIVEETQEE DAEPRETMNN DNARDGLDRK  180
DEEDCLRVSK ESKGGSDDEE QEEEAEPQSG CCVQEMTNNH NAHGLLDQRD EGDGKRVPEE  240
NEGESEDEEQ MQSVEKEVPG NSTVVSESDE LDTGSPLVRK KRFKQKSKRI KQPQNVASLR  300
TVPSPSRESS SRQTRSAEEH AKNQNGKAKT FSKKERENQE SARNLVFPNV KGKRSKWTDE  360
EIKMLKEGVR VCGTSNGKMQ WKKILEYGHK VFHKTREPVD LKDKWRRSLG KENKDNAHDG  420
FDQRDEEDGI RLSEENEGES EDKEQIRSVE KEAPGKSTVD SKSEKLDTGS PLVRSKQLKQ  480
KAKTKEQPPN AKTFSKRERE IQESSRNLVL PNGKRKRLDW TDEELKMLKE GVRLYGTSNG  540
KMQWKEILEH GHNVFHVTRQ PVDLKDKWRR YFCEKARKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	9e-06	MYB_related family protein