PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030929.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 475aa    MW: 54286.6 Da    PI: 6.6834
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030929.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.35.4e-89894701373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++ Ll  A+av++++   a + L++l + +s +gd++qR++ayf+  Laarl+   s  y+++  ++ts    +ee+ a+++++ vsP+++f+h+ta
  PCP030929.1  89 LIHMLLITATAVNENNVGSALEHLTELYKSVSLSGDSIQRVVAYFADSLAARLLTRRSPFYDIIMKEPTS----EEEFVAFTALYRVSPYYQFAHFTA 182
                  6899***************************************************9*****999888885....78889999**************** PP

         GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188
                   qaI ea+e+e     +++H+iDfd+s+G+QW++L+q+L++++  ++  slRiTg+g+    s +el+et++rL++f + + ++ fef+ l    l  
  PCP030929.1 183 IQAIIEAFEKEeeknnRALHVIDFDVSYGFQWASLIQSLSEKAtsRKRISLRITGFGR----SVDELRETENRLTSFSKGFqNLAFEFQGL----LRG 272
                  *********9977777788***********************9645566*********....9****************9857*******8....666 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   +l +Lr k++E+laVnl ++l +l  +++++++    +Lk v  l+P +v++veqe   +  +Fl rf+e+l+y++a+fdsl++ lp es er ++E
  PCP030929.1 273 SKLVNLRKKRNETLAVNLDFHLNTLS-NNLKISD----LLKSVHLLNPSIVILVEQEGTSSPRRFLSRFMESLHYFAAMFDSLDECLPLESAERLSIE 365
                  67789*****************9997.5566655....************************************************************ PP

         GRAS 287 rellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr..kvk.sdgyrveee............sgslv.lgWkdrp 366
                  +  lg+ei++++   +++     + e++e+W++r+e+ GF+ ++ls++   qa+lll+  +++ s ++  e++            +g  + lgW+dr 
  PCP030929.1 366 KNHLGKEIKSMLNYDNNNddNCPNIEKMETWKARMESHGFEGINLSTRSKIQARLLLKirTHYcSLEFDGESNgaaagfkvlereDGRTIsLGWQDRH 463
                  ************9776652267789*******************************97323333333333321333333333334555555******* PP

         GRAS 367 LvsvSaW 373
                  L++vSaW
  PCP030929.1 464 LLTVSAW 470
                  ******* PP
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    
MEDIDEEEEL LNLSLAIVTS SGRERFRKRK RSRDDGVVNS SVSPLNSYEG CEGKIFRLLQ  60
MREQMLKNLD HHKKKGVDVD DENGKGLHLI HMLLITATAV NENNVGSALE HLTELYKSVS  120
LSGDSIQRVV AYFADSLAAR LLTRRSPFYD IIMKEPTSEE EFVAFTALYR VSPYYQFAHF  180
TAIQAIIEAF EKEEEKNNRA LHVIDFDVSY GFQWASLIQS LSEKATSRKR ISLRITGFGR  240
SVDELRETEN RLTSFSKGFQ NLAFEFQGLL RGSKLVNLRK KRNETLAVNL DFHLNTLSNN  300
LKISDLLKSV HLLNPSIVIL VEQEGTSSPR RFLSRFMESL HYFAAMFDSL DECLPLESAE  360
RLSIEKNHLG KEIKSMLNYD NNNDDNCPNI EKMETWKARM ESHGFEGINL STRSKIQARL  420
LLKIRTHYCS LEFDGESNGA AAGFKVLERE DGRTISLGWQ DRHLLTVSAW HCTVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12333RERFRKRKRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.14e-49GRAS family protein