PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030746.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 487aa MW: 53752.1 Da PI: 9.1022

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030746.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.8e-06	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PCP030746.1 62 YVCEICNQGFQRDQNLQMHRRRH 84 9*********************9 PP
2	zf-C2H2	15.3	5.8e-05	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ PCP030746.1 142 WVCDKCSKGYAVQSDYKAHLKTC 164 58*******************98 PP
3	zf-C2H2	10.8	0.0016	172	190	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ PCP030746.1 172 DCGRVFSRVESFIEHQDTC 190 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MFDNTTTTNN NTAASCSAPP SSSSHENGGA THKRKRRPAG TPDPDAEVVS LSPKTLLESD 60 RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKREIAEDQV IKKKVFVCPE PSCLHHDPRH 120 ALGDLVGIKK HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV 180 ESFIEHQDTC TVRHVVRPEL QAALQPTACS SRTASSTSPS SDANFSISNN VAAPVVLAGL 240 PVRPNPTHHH DKRAGMNPYI SCNRQQQQQQ HQQQVHNNIL ELQLLPSSNA HTSSPPNLDE 300 SHATNLKLSI GSPSSDQLAN EKNESSKYNS SSDIKRRRSS PGNEKNINKA SAVGRVGSTS 360 ELVRLKEFAS EELKLAVAEK SYAEDARREA KRQIEMAEIE FANAKRIRQQ AQAEVEKALL 420 LKEQATKRIS SAILQITCQA CKQHFHIASA ASTVAGGAVG RSDETSLAMS YMSSATTEGE 480 GDHDHTA

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MFDNTTTTNN NTAASCSAPP SSSSHENGGA THKRKRRPAG TPDPDAEVVS LSPKTLLESD  60
RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKREIAEDQV IKKKVFVCPE PSCLHHDPRH  120
ALGDLVGIKK HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV  180
ESFIEHQDTC TVRHVVRPEL QAALQPTACS SRTASSTSPS SDANFSISNN VAAPVVLAGL  240
PVRPNPTHHH DKRAGMNPYI SCNRQQQQQQ HQQQVHNNIL ELQLLPSSNA HTSSPPNLDE  300
SHATNLKLSI GSPSSDQLAN EKNESSKYNS SSDIKRRRSS PGNEKNINKA SAVGRVGSTS  360
ELVRLKEFAS EELKLAVAEK SYAEDARREA KRQIEMAEIE FANAKRIRQQ AQAEVEKALL  420
LKEQATKRIS SAILQITCQA CKQHFHIASA ASTVAGGAVG RSDETSLAMS YMSSATTEGE  480
GDHDHTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-141	C2H2 family protein