PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030728.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 535aa MW: 57173.8 Da PI: 9.1103

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030728.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PCP030728.1 6 FICEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	13.3	0.00025	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PCP030728.1 82 WKCEKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EPKRKVYLCP EPTCVHHDPS 60 RALGDLTGIK KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 120 DSFITHRAFC DALAQESARH PPSLSTIGSS LYGGGSLSNT GLGLSHQVVG PPHQLSSLDH 180 NNQSSLLRLG GSSGADAAAR TGQFDHLLSS PSMGSSFRSA QSSAASFFMT GASDHDQSNQ 240 QQYHDQDKSF HGLMQFQSPH QHHSGGGANI FNLPFLSNST TNNTNSYSAN NNNLLISPDH 300 FNTNANGSTT GGGSDVSNNL FTGHLMGGGN NMSSGVPSLY SNNGNSQQQA MSSHMSATAL 360 LQKAAQMGST TSNNTTTASL LRSFGSSSST TTRPDRLGTL VPSSLGGMFG SDQTDQSHLQ 420 DLMDSFASGG GGSSIFGNAA FGGYDASANR AINMEDTKLQ QQNLGLSNIG GGSDRLTRDF 480 LGVGQVVRSM SGGFSHQRSE QQHGGMEMMS SLDSKSNAAA AVPSTQSFGG GGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EPKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESARH PPSLSTIGSS LYGGGSLSNT GLGLSHQVVG PPHQLSSLDH  180
NNQSSLLRLG GSSGADAAAR TGQFDHLLSS PSMGSSFRSA QSSAASFFMT GASDHDQSNQ  240
QQYHDQDKSF HGLMQFQSPH QHHSGGGANI FNLPFLSNST TNNTNSYSAN NNNLLISPDH  300
FNTNANGSTT GGGSDVSNNL FTGHLMGGGN NMSSGVPSLY SNNGNSQQQA MSSHMSATAL  360
LQKAAQMGST TSNNTTTASL LRSFGSSSST TTRPDRLGTL VPSSLGGMFG SDQTDQSHLQ  420
DLMDSFASGG GGSSIFGNAA FGGYDASANR AINMEDTKLQ QQNLGLSNIG GGSDRLTRDF  480
LGVGQVVRSM SGGFSHQRSE QQHGGMEMMS SLDSKSNAAA AVPSTQSFGG GGNFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	6e-99	C2H2 family protein