PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030727.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 542aa MW: 57970.5 Da PI: 8.5055

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030727.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ PCP030727.1 96 WKCDKCSKRYAVQSDWKAHSKTC 118 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MTSSILPPSS NATAAATGTA PPPQKKRRNQ PGNPSNSTEE DTTCLGSSSR RLIKNPGARS 60 IYALNHHAFT MTPLELSETS PASKKHYSRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT 120 REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPSSLST MGGNLYGNNH MSLGLPQIPS 180 LQNSTHLPNN MLRLGSGGSA KFEHLIPPSN PSSFGSQAMP NSPNFFMRDI ANQQGFQDQH 240 QFPSKALHGL MQLPDLQSNP NNNSPSSNSA ANLFNLSFFS NNSTSNSIAP PDHQFSDGNG 300 SGQGFSMGND HQIGSGSLPS LYGNSMQHEG GVAPHMSATA LLQKAAQMGS TTSTESSSLL 360 RGLGNSSTRA AKSGRQLVSA PSSVGVSFSG DHHHSTNGGE QHLRSSQQVE NENHLQGLMN 420 SLANGNSSIF GGGEQDHNNN FGGFSSGSTA NRVSAMDQQH NNPNYDEAKM HQNLGVNFGG 480 SDKLTLDFLG VGGMVRNMSG GHGYSQRDNL QQQHHGINMI SSLDPELESA QASQPFGGTT 540 LQ

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MTSSILPPSS NATAAATGTA PPPQKKRRNQ PGNPSNSTEE DTTCLGSSSR RLIKNPGARS  60
IYALNHHAFT MTPLELSETS PASKKHYSRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT  120
REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPSSLST MGGNLYGNNH MSLGLPQIPS  180
LQNSTHLPNN MLRLGSGGSA KFEHLIPPSN PSSFGSQAMP NSPNFFMRDI ANQQGFQDQH  240
QFPSKALHGL MQLPDLQSNP NNNSPSSNSA ANLFNLSFFS NNSTSNSIAP PDHQFSDGNG  300
SGQGFSMGND HQIGSGSLPS LYGNSMQHEG GVAPHMSATA LLQKAAQMGS TTSTESSSLL  360
RGLGNSSTRA AKSGRQLVSA PSSVGVSFSG DHHHSTNGGE QHLRSSQQVE NENHLQGLMN  420
SLANGNSSIF GGGEQDHNNN FGGFSSGSTA NRVSAMDQQH NNPNYDEAKM HQNLGVNFGG  480
SDKLTLDFLG VGGMVRNMSG GHGYSQRDNL QQQHHGINMI SSLDPELESA QASQPFGGTT  540
LQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	6e-48	C2H2 family protein