PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030533.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 536aa MW: 58194.8 Da PI: 8.8498

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030533.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PCP030533.1 87 FICEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	12.6	0.0004	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ PCP030533.1 163 WKCDKCSKRYAVQSDWKAHSKTC 185 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MMLFQPQYSQ QLVDENMSNL TSASGEAASV SSGNRNEIGT NFSQQFFTTP PQAQPALKKK 60 RNLPGNPDPD AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS 120 KEVRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA 180 HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITSANNPHH LLISQQQQQM 240 NLNQVQLGHQ FNQDIHGFSL KKEQQSFTTL RPDLPPWLGP PNCTIDLSSS SSLFSPTHHQ 300 DLSLDDSHNG TSQNPNPSPS SLGPTLPPFH PAPSPHMSAT ALLQKAAQMG ATMSTKHSTT 360 TAAAAAAAAS ASPQPIVRVH QHSQGHMSEF SGHVSAFAAA GANATNSTTG PAVSGVHHHH 420 QNQHHQASLL HDMMNSLSSG TGFEGAAFEL EAFGSLPNIL NNAKKDSTNS THFNRSGSDD 480 GGANGEGLTR DFLGLRALSH SDILNIAGIG NCVRSANAAA AVANTASRDH QKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MMLFQPQYSQ QLVDENMSNL TSASGEAASV SSGNRNEIGT NFSQQFFTTP PQAQPALKKK  60
RNLPGNPDPD AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS  120
KEVRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA  180
HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITSANNPHH LLISQQQQQM  240
NLNQVQLGHQ FNQDIHGFSL KKEQQSFTTL RPDLPPWLGP PNCTIDLSSS SSLFSPTHHQ  300
DLSLDDSHNG TSQNPNPSPS SLGPTLPPFH PAPSPHMSAT ALLQKAAQMG ATMSTKHSTT  360
TAAAAAAAAS ASPQPIVRVH QHSQGHMSEF SGHVSAFAAA GANATNSTTG PAVSGVHHHH  420
QNQHHQASLL HDMMNSLSSG TGFEGAAFEL EAFGSLPNIL NNAKKDSTNS THFNRSGSDD  480
GGANGEGLTR DFLGLRALSH SDILNIAGIG NCVRSANAAA AVANTASRDH QKPWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	126	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-118	C2H2 family protein