PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP030521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36488.8 Da PI: 6.4988 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl PCP030521.1 14 RGLWSPEEDEKLINCITTYGHGCWSSVPKLAGLQRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.5e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ PCP030521.1 67 RGSFSPQEAALIIELHSILGNK-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence |
MGHHSCCNKQ KVKRGLWSPE EDEKLINCIT TYGHGCWSSV PKLAGLQRCG KSCRLRWTNY 60 LRPDLKRGSF SPQEAALIIE LHSILGNKWA QIAKHLPGRT DNEVKNFWNS SIKKKLIPHE 120 VNPAFASFSS NHIHNSRGHG SEEGFFTLNT NPNLGSQPQD QLYLPIVPPM PSLGLDDHGD 180 FNNILKLDQT SYASNFVDHF LPPFQLPSNN SSSCESSSWS LGYQPHYQYD PNVQNFSINE 240 AAAAQYNNGG NELMVPISMA SSAPAAYENP SNIPTMPQFC EIIDSNACGM PIPYPSDAQE 300 LDSLAKLSCF TSGHGSHPQD LQFPSNQLE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 2e-78 | MYB family protein |