PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030262.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 368aa    MW: 41750.6 Da    PI: 4.0619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030262.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS93.23.9e-291653662209
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL ++ ea++ g+ el + ++  l e ++p g++++Rla+y+ ++     ++      + l+  ++   + ++  aa++lf++++P+ +f+h +aN
  PCP030262.1 165 RHLLKAFGEAMEMGQRELGEVIMRCLAEKVNPLGQSLERLAFYLCQGVVDNQQG------DYLK--QE---SCKNFEAAFNLFYQIFPFGRFAHYAAN 251
                  7999999****************************************9988887......2222..22...356777899****************** PP

         GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl.vakrledl 189
                   aIleav ++ e+vH++ fdi++G+Q   L++a a+R++    l +T+++   ++       + + eet+++L++ A+++gv+++ + + +++ ++++
  PCP030262.1 252 TAILEAVPEDvETVHVVEFDIGEGVQLSQLIEAVAKRNKT---LEVTAIKWDVEEndevapPQWRFEETKRQLQHHARSFGVNLKVEEIeIEDLVSEI 346
                  *******9999**************************765...99***9875555567899999***********************99333344555 PP

         GRAS 190 eleeLrvkpgEalaVnlvlq 209
                  +  + r  ++E la n++ +
  PCP030262.1 347 KKANKRGGRREFLAFNSMQE 366
                  55555555599999998865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MMQSEMNFQT LWPYLNVTNS ALDTNEYTEQ MGSSEFSSIF MASDEFSETS FPFSTMFSGE  60
FEQLADCDNL LQVTSMAVEE FPMELGGFET NYLIGEIENM YASCLEGSEG SNTLPSQQIS  120
GERNDMWSPN PFATSEASSM DVTSVQQSIT LPTDEMEINN EVRIRHLLKA FGEAMEMGQR  180
ELGEVIMRCL AEKVNPLGQS LERLAFYLCQ GVVDNQQGDY LKQESCKNFE AAFNLFYQIF  240
PFGRFAHYAA NTAILEAVPE DVETVHVVEF DIGEGVQLSQ LIEAVAKRNK TLEVTAIKWD  300
VEENDEVAPP QWRFEETKRQ LQHHARSFGV NLKVEEIEIE DLVSEIKKAN KRGGRREFLA  360
FNSMQEVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-14GRAS family protein