PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030007.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 295aa    MW: 32596.4 Da    PI: 5.3116
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030007.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.67.6e-37101012102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ +++isw+e+g++fvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+kell++i+
   PCP030007.1  10 FLMKTYQLVDDPSSDDVISWNESGTTFVVWKTVDFARDMLPKYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANDNFQRGQKELLSQIR 97 
                   9***************************************************************9999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
   PCP030007.1  98 RRKS 101
                   **97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MAQRSVPAPF LMKTYQLVDD PSSDDVISWN ESGTTFVVWK TVDFARDMLP KYFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANDNFQRGQK ELLSQIRRRK SVTSTAAHAP PGEKSGVPST  120
PSNSGEEMAS TSTSSPDSKN PGSVETAAPS QVSDLSDENE KLKRENENLN SELAQTKKQC  180
DELVGFLVEH MKMKPDQINR IIGQGICGPS GDDFEADDHG LDLDMEGGDD EEEEEEGLKL  240
FGVWMKGEEK MKGKKTGRYE KLGVGGGGAG GPRGKRMKGG VEFHAPMMRT GKVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-76HSF family protein