PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP029890.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 458aa    MW: 51642.4 Da    PI: 6.3956
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP029890.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.82e-134444551374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA +v+sg+ e+a+  L ++s+laspdgd+mqR+aayfteALa+r+++ +++l kal++++ s  ++see+ +++lf++++P+lk++++++
  PCP029890.1  44 LIQLLYACASHVTSGSIEKANFWLDQISQLASPDGDSMQRIAAYFTEALANRMLKGWPGLHKALHSTKIS--SVSEEIIVQRLFFDLCPFLKVAYVVT 139
                  689*************************************************************999987..5************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI+ea+ege++vHiiD+   +++QW++L+q+L++Rpegpp+lRiTg+++    +ke l ++  +L++ A +l++pf+fn+ ++++le+l++e+Lrv
  PCP029890.1 140 NQAIVEAMEGEKMVHIIDLHSCEPAQWINLIQTLNARPEGPPHLRITGINE----QKEVLDQMFLQLTEEAGNLNIPFQFNA-IVSKLENLDIESLRV 232
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll...............................................desvsleserdevLklvkslsPkvvvvveqead 247
                  k+gEala+++vlqlh++l                                                +++s +s++ ++L  +++l Pk++v++eqea+
  PCP029890.1 233 KTGEALAICSVLQLHSFLasdddqrrksplasknlqkvlhmnkltlgewlekdpisaynlspdtaWSPLSGASPTGSFLTSLWGLAPKLMVITEQEAN 330
                  **************************************************************999889999999************************ PP

         GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                  hn++++++r++eal++y alfd+le++++r+  er+kvE++l+g+ei+n++aceg+errerhe+lekW  rle aGF++vpls++ + qa+  l+ ++
  PCP029890.1 331 HNGHTLMDRIMEALHFYGALFDCLESTVSRAPMERQKVEKMLFGEEIKNIIACEGTERRERHEKLEKWILRLELAGFGKVPLSYNGMLQARGFLHGYD 428
                  ************************************************************************************************99 PP

         GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    gy+++ee+g+++++W+drpL+++S Wr
  PCP029890.1 429 --GYKIKEENGCVFICWHDRPLFTISGWR 455
                  ..**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    
MAQDGGSPVT SSPLQFFPWL SPGMGSPYSP WLRELKSEER GLCLIQLLYA CASHVTSGSI  60
EKANFWLDQI SQLASPDGDS MQRIAAYFTE ALANRMLKGW PGLHKALHST KISSVSEEII  120
VQRLFFDLCP FLKVAYVVTN QAIVEAMEGE KMVHIIDLHS CEPAQWINLI QTLNARPEGP  180
PHLRITGINE QKEVLDQMFL QLTEEAGNLN IPFQFNAIVS KLENLDIESL RVKTGEALAI  240
CSVLQLHSFL ASDDDQRRKS PLASKNLQKV LHMNKLTLGE WLEKDPISAY NLSPDTAWSP  300
LSGASPTGSF LTSLWGLAPK LMVITEQEAN HNGHTLMDRI MEALHFYGAL FDCLESTVSR  360
APMERQKVEK MLFGEEIKNI IACEGTERRE RHEKLEKWIL RLELAGFGKV PLSYNGMLQA  420
RGFLHGYDGY KIKEENGCVF ICWHDRPLFT ISGWRSRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein