PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP029524.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 333aa    MW: 37837.6 Da    PI: 10.4718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP029524.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004795117223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C+ C+++++++ +L  H +  H
  PCP029524.1  95 SCSVCSRVYPTSRLLSIHVSEaH 117
                  6*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MASMDVEEAR LVFPHWKPLR RRFAPESPFF ASGNIERELL AKQIALDLTE DEKHQLQEMV  60
DEQGRGVFCP IVGCGARLSS LEDFEDHYNA RHTASCSVCS RVYPTSRLLS IHVSEAHDSF  120
FQAKVARGYL MYECLVEGCG LKFKNYKSRQ QHLVDKHKFP TSFEFFKKAL PSKKQRQKKN  180
QRRQVVPKKA DSSSTQVDNE TMDGLVSAVS KLSTSDSTPS AISFGHRPTR GVAFVPRAVQ  240
PHNFDIRVRV RVLRSLNSSA RRKKMDAIDS VFNPLREFSK DSVRLVKRCH KPDRKEFTKV  300
AIRTAIGFVV MGFVGFFVKL IFIPINNIIV GAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-107C2H2 family protein