PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP029223.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 190aa    MW: 20823 Da    PI: 10.6486
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP029223.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.81.4e-183078149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k++e+k +r+vtfskR+ g++ K  ELSvL++ae a i++s++gk++ +
  PCP029223.1 30 KKVEDKNKRHVTFSKRKRGLFNKTAELSVLTGAETAAIVVSNSGKVFCF 78
                 6789*****************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MAKSPDNRIT NKDAENGKKE SKSRRRVEIK KVEDKNKRHV TFSKRKRGLF NKTAELSVLT  60
GAETAAIVVS NSGKVFCFGS PSPDAVIERY VGHNASLSAG QPDNYHPQIN NTHRSTNSSN  120
VNTSSSKKQI QDYEKASRLL KEEKILKGGK KSNSNNNGGD EGGAAGREVE GELRQTDTRG  180
YGNTRQRSTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-19M-type_MADS family protein