PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP029065.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 364aa MW: 40552.6 Da PI: 4.7297

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP029065.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.4e-15	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ +++ G ++W++ +++ g+ R++k+c++rw +yl PCP029065.1 17 RGPWSPAEDLRLITFIQKNGHDNWRALPKRAGLLRCGKSCRLRWINYL 64 89****************************99**********97 PP
2	Myb_DNA-binding	50.3	5.5e-16	70	115	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l PCP029065.1 70 RGNFTIEEEESIIRLHEALGNK-WSKIAAHFP-GRTDNEIKNVWNTHL 115 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MGGKGRSPCC DKEKVKRGPW SPAEDLRLIT FIQKNGHDNW RALPKRAGLL RCGKSCRLRW 60 INYLRPDVKR GNFTIEEEES IIRLHEALGN KWSKIAAHFP GRTDNEIKNV WNTHLKKRLG 120 CQNLPSSSSS SSSTTSTTLL SGGKPSVGGG EELIEHQSAE ETSMATNNKP HEPCSLTIQE 180 NPNHHDSPME LTNDPKELTG LTTSSSNVSS NESNGSSSSS QVVGMSRPGA EEQQMDDSND 240 FSGIFDFPFE SDSDFWDMFN DFEPLQSNLV QVLHEADEAN CQRSGLGQVE NGKWLSYLES 300 ELGLEVTPTE SEKNNQEILP KYASEQQVFP EAFDKMPNPT EADESMDYFN SNVAFATQQF 360 LHSN

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MGGKGRSPCC DKEKVKRGPW SPAEDLRLIT FIQKNGHDNW RALPKRAGLL RCGKSCRLRW  60
INYLRPDVKR GNFTIEEEES IIRLHEALGN KWSKIAAHFP GRTDNEIKNV WNTHLKKRLG  120
CQNLPSSSSS SSSTTSTTLL SGGKPSVGGG EELIEHQSAE ETSMATNNKP HEPCSLTIQE  180
NPNHHDSPME LTNDPKELTG LTTSSSNVSS NESNGSSSSS QVVGMSRPGA EEQQMDDSND  240
FSGIFDFPFE SDSDFWDMFN DFEPLQSNLV QVLHEADEAN CQRSGLGQVE NGKWLSYLES  300
ELGLEVTPTE SEKNNQEILP KYASEQQVFP EAFDKMPNPT EADESMDYFN SNVAFATQQF  360
LHSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	GGKPSVGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	6e-71	MYB family protein