PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028978.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25701.3 Da    PI: 10.0273
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028978.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-211762449
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  n+sn qvtfskRr g++KKA+EL++LC+aev +i+fs+  k++ +
  PCP028978.1 17 ANESNLQVTFSKRRSGLFKKASELCTLCGAEVGIIVFSPGRKVFSF 62
                 699************************************9999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MARKSKGRQK VEMVKMANES NLQVTFSKRR SGLFKKASEL CTLCGAEVGI IVFSPGRKVF  60
SFGHPSVEAV IDRFLSRNPS NHHLHPTSGT MQLIEAHRNA TVRELNTELT QVMNQLEVEK  120
KRGDQLNQMK RVSQAQCWWE GPVDEMEMPQ LDQLKSSLED LKKNVSKQAD RVLILNTTHP  180
SSQYFVGSSS HQPVIPNVGF NGNHHVMPPH PLPHLDGWNH PAYGRFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-75M-type_MADS family protein