PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028956.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 475aa MW: 52154.8 Da PI: 6.9838

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028956.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.6	2.6e-28	112	170	1	60
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ldDgy+WrKYGqK+vkg+ + rsYYrCt+++C+vk++ver++ +++++++Y geH+h+k PCP028956.1 112 LDDGYHWRKYGQKHVKGNSYVRSYYRCTHPKCEVKRQVERKQ-SGQITDTIYFGEHEHPK 170 59*************************************9.*************85 PP
2	WRKY	103.2	1.4e-32	274	331	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vkg+++prsYYrC+ +gCpv+k+ver+++d kvv+ tYeg+H+h+ PCP028956.1 274 SDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVRKHVERASHDSKVVIATYEGQHDHD 331 8********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MISRGEDGTD KVASDVVQKK ESSDSELNVP HQTPNKGICP LQSDHKGTAQ FLTPEKASQV 60 PDGVVSASQP NQEGSASSLT SEKTPQTPET TALALRSGQE GTTPSTTPER VLDDGYHWRK 120 YGQKHVKGNS YVRSYYRCTH PKCEVKRQVE RKQSGQITDT IYFGEHEHPK VQSVPAAVSF 180 VVSIVDDERP EVVLETDGED KSSNAHGHTS NQIEPVDPPQ LSSVAVTEAV QGVLAQSNRT 240 RDGDPDPKRQ KKAKHKGNSL PVVVQTLSEV DIVSDGYRWR KYGQKLVKGN PNPRSYYRCS 300 NPGCPVRKHV ERASHDSKVV IATYEGQHDH DMPPTRTVTH NAAASNVFTT ARISESGTVP 360 KGNAVRRETS PEHEVKPSKQ RNDESKTKSS DVAGSDMVVD SDLSPKRTLH EKLVAKACTT 420 KESEPPYMVV CRADQMKTLE LGIKSEGDDM VVCDNLRPES NPLEQEKPKA EPVDG

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MISRGEDGTD KVASDVVQKK ESSDSELNVP HQTPNKGICP LQSDHKGTAQ FLTPEKASQV  60
PDGVVSASQP NQEGSASSLT SEKTPQTPET TALALRSGQE GTTPSTTPER VLDDGYHWRK  120
YGQKHVKGNS YVRSYYRCTH PKCEVKRQVE RKQSGQITDT IYFGEHEHPK VQSVPAAVSF  180
VVSIVDDERP EVVLETDGED KSSNAHGHTS NQIEPVDPPQ LSSVAVTEAV QGVLAQSNRT  240
RDGDPDPKRQ KKAKHKGNSL PVVVQTLSEV DIVSDGYRWR KYGQKLVKGN PNPRSYYRCS  300
NPGCPVRKHV ERASHDSKVV IATYEGQHDH DMPPTRTVTH NAAASNVFTT ARISESGTVP  360
KGNAVRRETS PEHEVKPSKQ RNDESKTKSS DVAGSDMVVD SDLSPKRTLH EKLVAKACTT  420
KESEPPYMVV CRADQMKTLE LGIKSEGDDM VVCDNLRPES NPLEQEKPKA EPVDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04880.2	5e-85	WRKY family protein