PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028886.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 596aa    MW: 66915.9 Da    PI: 4.7536
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028886.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.57.2e-882245942374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkfshl 96 
                  ve Ll  Ae v  ++ e+a +lL+r   ++s++g+p++R++++f eAL++++ r++ +++ ++   +++ + + + ++  +++   +   P+ ++ ++
  PCP028886.1 224 VEFLLVSAEKVGYQQYERAGNLLKRCDSRSSSTGNPVERVVHFFSEALREKIDRETGRVAPKVlGNKQSFDVDRAMKIPNDTTlaCQIKLPFGQVVQF 321
                  6789999***********************************************766666555244444444444444444444455668******** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  +  qaI+e v+++++vH+iD++i +G+QW  L+qaLasR +     l+i +vg    + +e++eetg+rL +fA+++++pf f++++++++ dl+ ++
  PCP028886.1 322 AGIQAIVENVAEAKKVHVIDLEIRNGVQWTGLMQALASRCDClLELLKISAVGT---TCRESVEETGKRLGSFAQTMNLPFCFKIVMVEDMLDLKEDM 416
                  ***************************************9652669********...69*************************************** PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  ++++++E+++V + ++l ++++++  les     +k++k+++P v vv+e ea+hns+ F++rf++al y++a+fd+le+ + r++ +r+ +E +++g
  PCP028886.1 417 FELDSEETVVVYSEFALRSMVSKPDRLES----AMKVIKNIRPCVTVVTEVEANHNSPVFVTRFIDALFYFAAFFDCLETCIQRDDPNRSILESMYFG 510
                  ********************977777777....***************************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    i+n+va+eg+er+ r+ +   Wr+ + + G+++++ls++   qa+l+l++++ ++  +++ + ++l+lgWk+ pL s+S W+
  PCP028886.1 511 TGIRNIVANEGEERNIRNVKIDVWRAFFARYGMEEIELSSSSLYQADLILKNFPyGNSCTLNMDGKCLLLGWKGTPLHSLSLWK 594
                  ******************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    
MFSFGDFNFA GVHDIFSSTE KGFDGMEAEN NVGKQVNLFG AEEWGKLGEF GSVDSDHGFY  60
GNDYSSGGNL FPKYQQEEQQ QPLIPYYGLY DAMQFDPLSM PFQACSGKIA KLEDIPNLVP  120
HVEPKKEKRD PFSSLAGLDL LNSYGSGFKR LNGERNFESS NYNACTDQVA TGRKLSTEEI  180
MRVAGARFIQ TYSQVSDVPS MLSHPFGSSF SGLSDEEARD VELVEFLLVS AEKVGYQQYE  240
RAGNLLKRCD SRSSSTGNPV ERVVHFFSEA LREKIDRETG RVAPKVLGNK QSFDVDRAMK  300
IPNDTTLACQ IKLPFGQVVQ FAGIQAIVEN VAEAKKVHVI DLEIRNGVQW TGLMQALASR  360
CDCLLELLKI SAVGTTCRES VEETGKRLGS FAQTMNLPFC FKIVMVEDML DLKEDMFELD  420
SEETVVVYSE FALRSMVSKP DRLESAMKVI KNIRPCVTVV TEVEANHNSP VFVTRFIDAL  480
FYFAAFFDCL ETCIQRDDPN RSILESMYFG TGIRNIVANE GEERNIRNVK IDVWRAFFAR  540
YGMEEIELSS SSLYQADLIL KNFPYGNSCT LNMDGKCLLL GWKGTPLHSL SLWKFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-59GRAS family protein