PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028848.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 353aa MW: 39890.8 Da PI: 5.9488

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028848.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.6e-18	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl PCP028848.1 42 RGPWTVEEDLALMNYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 89 89********************************************97 PP
2	Myb_DNA-binding	47.9	3e-15	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ PCP028848.1 95 RGNISLEEQLLILELHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 138 78899***************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MDMAKGSRDC NSPSSQFSAE ILNETGSYDH EEAEDQMMDL RRGPWTVEED LALMNYIANH 60 GEGRWNSLAR CAGLKRTGKS CRLRWLNYLR PDVRRGNISL EEQLLILELH SRWGNRWSKI 120 AQQLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSKQFKDTM RYLWMPRLVE RIQAAAATST 180 AINATATNSS IAAPATTHHF NNNINNNFQS SAQMLLQPSD HQFGVSSHSQ LTPSYNTPEN 240 SSTAASSDSF GTQVSPVSDL TDYYTPTTAA AAISVNNNHT PDNSYFVQAN HQVGTYDNYS 300 GYFGNQGFGL EHFQNMDEQN NNGQWGTVDG GDISDNLWNV EDMWFLQQQL SNI

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MDMAKGSRDC NSPSSQFSAE ILNETGSYDH EEAEDQMMDL RRGPWTVEED LALMNYIANH  60
GEGRWNSLAR CAGLKRTGKS CRLRWLNYLR PDVRRGNISL EEQLLILELH SRWGNRWSKI  120
AQQLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSKQFKDTM RYLWMPRLVE RIQAAAATST  180
AINATATNSS IAAPATTHHF NNNINNNFQS SAQMLLQPSD HQFGVSSHSQ LTPSYNTPEN  240
SSTAASSDSF GTQVSPVSDL TDYYTPTTAA AAISVNNNHT PDNSYFVQAN HQVGTYDNYS  300
GYFGNQGFGL EHFQNMDEQN NNGQWGTVDG GDISDNLWNV EDMWFLQQQL SNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06490.1	3e-88	MYB family protein