PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP028635.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 35965.3 Da PI: 7.6948 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++++G g+W++ +++ g++R++k+c++rw++yl PCP028635.1 15 RGPWTPEEDRKLLAYIQLYGHGSWRSLPQKAGLKRCGKSCRLRWRNYL 62 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.8e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+++l PCP028635.1 68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-RRTDNEVKNYWNSHL 113 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence |
MGKSSCYAAA SGIKRGPWTP EEDRKLLAYI QLYGHGSWRS LPQKAGLKRC GKSCRLRWRN 60 YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPRR TDNEVKNYWN SHLKKRLAKI 120 GFDPVTHKPK AAILGSANGD PKNWSNLSHI AQWESARLQA EARSVKESKL RMHESAPAPS 180 LSDDHHQFAP PLVPQCLDIL RASAWESLIS MSRSSSRSAA QTNMNGQGNV SFGDHHHVHD 240 HGINMNAQDY GSNFEAPTSD QQLSSLMGYD DATLMSSVAT GSMDINELFG EYCGDECSEL 300 LAALPHDTGF EFGDAWTSLE QLM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 5e-89 | MYB family protein |