PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028499.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 474aa    MW: 52916 Da    PI: 6.1506
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028499.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.91.8e-141494711374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v++g+le+a+ +L+++s+la+ dgd+mqR+aayfteALa r+++ +++l +al++++ s   +s+e+ ++k+f+e+ P+lk++++++
  PCP028499.1  49 LIHLLLTCANHVATGSLENANVALEQISQLAAADGDTMQRIAAYFTEALADRILKAWPGLHRALNSTKIS--LVSDEILVRKVFFEMLPFLKVAFVLT 144
                  689*************************************************************999998..7************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI+ea+ege++vHiiD+++ +++QW++Llq L++Rpegpp+lRiTgv++    +ke l ++++rL++ Ae+l++pf+f + + ++le+l++++Lrv
  PCP028499.1 145 NQAIMEAMEGEKMVHIIDLNAAEPVQWITLLQVLSARPEGPPHLRITGVHQ----RKEVLDQMAHRLTEEAEKLDIPFQFCP-IISKLENLDMDKLRV 237
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll......................................................desvsles..erdevLklvkslsPkv 238
                  k+gEala+++vlqlh+ll                                                      ++++sl+   + d++L+++++l Pkv
  PCP028499.1 238 KTGEALAISSVLQLHSLLasddgllkkksplasrgsngnhlpralqmsqgtlgellekemgngyspspdstsSSPLSLTPsaKLDSFLNAFWGLTPKV 335
                  ********************************************************************999855555544457899************ PP

         GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                  +v++eq+++hn+++++er+le+l+ y+alfd+le++++r+s er kvE++l+g+ei+n++aceg+er+erhe+lekW +rl+ aGF+++pls++ + q
  PCP028499.1 336 MVITEQDSNHNGSTLMERLLESLYSYAALFDCLESTMSRTSLERLKVEKMLFGEEIKNIIACEGSERTERHEKLEKWIQRLDLAGFGNMPLSYYGMLQ 433
                  ************************************************************************************************** PP

         GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ak++l+ ++ dgyr+ ee+g++++ W+drpL+svSaWr
  PCP028499.1 434 AKRMLQSYGCDGYRMREENGCVLISWQDRPLFSVSAWR 471
                  *************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    
MAPMFQDEGS SSATSSPLQC FSMISLSPSL GSPYPWLKEL KSEDRGLYLI HLLLTCANHV  60
ATGSLENANV ALEQISQLAA ADGDTMQRIA AYFTEALADR ILKAWPGLHR ALNSTKISLV  120
SDEILVRKVF FEMLPFLKVA FVLTNQAIME AMEGEKMVHI IDLNAAEPVQ WITLLQVLSA  180
RPEGPPHLRI TGVHQRKEVL DQMAHRLTEE AEKLDIPFQF CPIISKLENL DMDKLRVKTG  240
EALAISSVLQ LHSLLASDDG LLKKKSPLAS RGSNGNHLPR ALQMSQGTLG ELLEKEMGNG  300
YSPSPDSTSS SPLSLTPSAK LDSFLNAFWG LTPKVMVITE QDSNHNGSTL MERLLESLYS  360
YAALFDCLES TMSRTSLERL KVEKMLFGEE IKNIIACEGS ERTERHEKLE KWIQRLDLAG  420
FGNMPLSYYG MLQAKRMLQS YGCDGYRMRE ENGCVLISWQ DRPLFSVSAW RCRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein