PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028492.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 385aa MW: 43848.7 Da PI: 6.8216

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028492.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H PCP028492.1 245 YKCETCNKVFKSYQALGGHRASH 267 9************9999998887 PP
2	zf-C2H2	11.3	0.0011	304	326	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H PCP028492.1 304 HECPVCFRVFSSGQALGGHKRSH 326 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MEERCKICMR SFPNGRALRG HMRSYVMNHP IPPKPEDEDE EANREQTQLT VDELCDLASA 60 SSPSSSDNEE EHDDDMIYGL RENPKRSIKQ VDPEFSFVIH AGSIVLQDRE SETESSKNPT 120 RRRCKRTRKS SMMALHHHQN HNQYHHHQKL ESFKKIKVKN KVVSSKADSF DPEPVSSISD 180 ATKEEDVAFC LMMLSRDKWK KQDRHHHHEQ EQEKDDEVER STEDTDDSEE HLINLPRTRT 240 ARGKYKCETC NKVFKSYQAL GGHRASHKKK IKALNANPIN KPELEQENYN VAGNSSSVAE 300 RKIHECPVCF RVFSSGQALG GHKRSHVMSG SAAEASNSSP PLKSLSKLGD SLIDLNLPAP 360 FDDDDISQIE LSAVSDSEFV NHVRR

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MEERCKICMR SFPNGRALRG HMRSYVMNHP IPPKPEDEDE EANREQTQLT VDELCDLASA  60
SSPSSSDNEE EHDDDMIYGL RENPKRSIKQ VDPEFSFVIH AGSIVLQDRE SETESSKNPT  120
RRRCKRTRKS SMMALHHHQN HNQYHHHQKL ESFKKIKVKN KVVSSKADSF DPEPVSSISD  180
ATKEEDVAFC LMMLSRDKWK KQDRHHHHEQ EQEKDDEVER STEDTDDSEE HLINLPRTRT  240
ARGKYKCETC NKVFKSYQAL GGHRASHKKK IKALNANPIN KPELEQENYN VAGNSSSVAE  300
RKIHECPVCF RVFSSGQALG GHKRSHVMSG SAAEASNSSP PLKSLSKLGD SLIDLNLPAP  360
FDDDDISQIE LSAVSDSEFV NHVRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	157	RRCKRTRKSSMMALHHHQNHNQYHHHQKLESFKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	5e-46	C2H2 family protein