PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028353.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TALE

Protein Properties

Length: 476aa MW: 53028.9 Da PI: 6.5724

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028353.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.2	1.2e-07	387	420	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + PCP028353.1 387 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420 469*****************************87 PP
2	ELK	28.6	3.2e-10	341	362	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ PCP028353.1 341 ELKHELKQGYKEKIVDIREEIL 362 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MAYHNHLSQD LPLHHFTDQT HHQHQQYQSD QPDQNSKPTE PHHPFQPAPN WLNSALLRNF 60 TNTDTNPTNS NNASNNGGGV SNFLNLHVTA SDSAASQASN QWLSQSHRPI LHHNHSDVID 120 DVTVAGDSMI AAAMSHDSAD LKPNSILNKY DGGVVESGIP GGGGGGDGGV MNWQNARHKA 180 EILAHPLYEP LLSAHVSCLR IATPVDQLPR IDAQLAQSQN VVAKYSALGN GMVGDDKELD 240 QFMRNYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG TSATMSDDED 300 DQVDSDANLF DGGMEGHDSM GFGPLIPTES ERSLMERVRQ ELKHELKQGY KEKIVDIREE 360 ILRKRRAGKL PGDTTSVLKA WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR 420 NWHSNPSTST VLKSKRKRKK KAHADSEVAI INPIRAVTQV CSKDADDRSV CNIIYH

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MAYHNHLSQD LPLHHFTDQT HHQHQQYQSD QPDQNSKPTE PHHPFQPAPN WLNSALLRNF  60
TNTDTNPTNS NNASNNGGGV SNFLNLHVTA SDSAASQASN QWLSQSHRPI LHHNHSDVID  120
DVTVAGDSMI AAAMSHDSAD LKPNSILNKY DGGVVESGIP GGGGGGDGGV MNWQNARHKA  180
EILAHPLYEP LLSAHVSCLR IATPVDQLPR IDAQLAQSQN VVAKYSALGN GMVGDDKELD  240
QFMRNYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG TSATMSDDED  300
DQVDSDANLF DGGMEGHDSM GFGPLIPTES ERSLMERVRQ ELKHELKQGY KEKIVDIREE  360
ILRKRRAGKL PGDTTSVLKA WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR  420
NWHSNPSTST VLKSKRKRKK KAHADSEVAI INPIRAVTQV CSKDADDRSV CNIIYH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	418	440	RKRNWHSNPSTSTVLKSKRKRKK
2	435	441	KRKRKKK
3	436	440	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-177	TALE family protein