PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028272.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Protein Properties

Length: 498aa MW: 55631.5 Da PI: 8.6688

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028272.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.8	3e-16	130	206	15	99
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l lp f+++h + +++t+tledesgr+++ k+i +k++ l++GW++F+ +++L egD++ F+l++ ++f +v ++r+ PCP028272.1 130 SLGLPSLFCKSHLPD--KDITMTLEDESGRQYQSKYIACKTG----LSAGWRQFAASHNLLEGDVLAFQLVEPTKF--KVYIIRS 206 4789******644..678************777776....*********************9876666..9998886 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MARNVKNAKP QTPLSKEDGH LTPPPLPKPR LRPKPATNPK PSSLPTGKLK KPGKPKEQEV 60 EYSMPMKELS NTQITKMLSH AGKSLAISNT QYDFPVDGSP SRGQAKSSAV IRAQEVRSKL 120 EPQFPSFVKS LGLPSLFCKS HLPDKDITMT LEDESGRQYQ SKYIACKTGL SAGWRQFAAS 180 HNLLEGDVLA FQLVEPTKFK VYIIRSNGLA EVDGDLGLPN LDNNTKQKDA GKFINLSVYK 240 DNAETSTTPC NDSTKKCAAT STMPWNDSNR KRAHSPQLVV PKKKKIGLLQ VKQSETDSEE 300 VGSEVSEDLK SPAATLQFED IRSYENFNIL VDGLFLDPEF PEDVRRKYYK LCRSQKAFLH 360 ENVIKGMNHN LIIGAISETV NIADSIKACK VTALRDDFMS WDKYLTAFEL LGMNVGFLRE 420 RVCRLANLAD DSEAAMEAKM YKEARIERSQ AGIGIRNIEL RLEELMEACD EFGAAIESLR 480 SKAEINKLRF QEEVTAPW

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MARNVKNAKP QTPLSKEDGH LTPPPLPKPR LRPKPATNPK PSSLPTGKLK KPGKPKEQEV  60
EYSMPMKELS NTQITKMLSH AGKSLAISNT QYDFPVDGSP SRGQAKSSAV IRAQEVRSKL  120
EPQFPSFVKS LGLPSLFCKS HLPDKDITMT LEDESGRQYQ SKYIACKTGL SAGWRQFAAS  180
HNLLEGDVLA FQLVEPTKFK VYIIRSNGLA EVDGDLGLPN LDNNTKQKDA GKFINLSVYK  240
DNAETSTTPC NDSTKKCAAT STMPWNDSNR KRAHSPQLVV PKKKKIGLLQ VKQSETDSEE  300
VGSEVSEDLK SPAATLQFED IRSYENFNIL VDGLFLDPEF PEDVRRKYYK LCRSQKAFLH  360
ENVIKGMNHN LIIGAISETV NIADSIKACK VTALRDDFMS WDKYLTAFEL LGMNVGFLRE  420
RVCRLANLAD DSEAAMEAKM YKEARIERSQ AGIGIRNIEL RLEELMEACD EFGAAIESLR  480
SKAEINKLRF QEEVTAPW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	285	RKRAHSPQLVVPKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-28	B3 family protein