PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028205.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 1529aa MW: 170577 Da PI: 6.2341

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028205.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	905	926	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H PCP028205.1 905 KCDKCPREFFSSINYRRHIRVH 926 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1529 aa Download sequence
MGSVGEVGEG RVLSDVEETI FVAVGKDLKQ SETTLAWAVK NFAGKRICLL HVHKPSLLLS 60 LSEGIGSASK LKQGAVKALQ GAERTKLRKL LDQYRMVLTG AGVEANELWI EMGNVEEGIV 120 EIIARHHIRW LVMGAAADEH YSEGDREDES EIEIAPPLLL MNSAFGTEQP EHLRSESTDS 180 LRNLSSADAE EDTSELEEIS GRSTLLMIDA EGEANGESYH SVEQAIVDTK NLKQKEFEQT 240 TRRWKEEDDE MEAKCKAKAF ESLCTKEMSQ RKEMEEKLAR LKQEIDGVKD ESEEFIRQLS 300 MVEDKKLVLE KQLEASQCEV RELEEKIISA AGLLMSFREK RDTMKIEHRN AIRKVRRLET 360 MINGEAASFD QAEFPIFSFM EINEATHNFD PSWKIKEGRR GSVYKGILRH MHVAIKMLPS 420 YGSKTQLDFE HEVEVLSRVR HPNLVTLIGT CPESRSLVYE YLRNGCLEDL LACKDSTPPL 480 PWQIRTSIAT EICSALIFLH SNIPCLVHGN LKPSNILFDA NFVSKLVNLG ISSLIPQNEN 540 PTNFTKICSD PNGAHVYMDP EYLETGKLTP ESDVYSFGII LLQLLTARPL SGLVKDVKYA 600 LENDNFKALL DVSAGDWPLE QAKEMAYIAL RCCENKRLDR LDLLVAHEAM RASCAASASC 660 LVSKKLIRTP SHFLCPILQE VMQDPHIAAD GFTYEEEAIR GWLKSGHNTS PMTNLELEHC 720 KLVPNYALQP LYFLLANSLT LSGHLRLVNF LHFLGDFPSR QTLRISLPPA PIPADIPTSS 780 LFLNRSLLAP PLLSEVYSVS DQAWFCMFMI SSSGMPILDI WRSGGFVFLM SIAKPTTSDS 840 LYAMKSGEEN DSIDTIIRQV AKEPSISFSR AGDSPVPWIQ LLHALDQQEL PGWPLHSPIK 900 VQMQKCDKCP REFFSSINYR RHIRVHHRLK KLDKDSSKNR ELLREFWDKL SPEEAKEAVS 960 FNDVTLEEVP GSSIIKALTI LIRKPGFSSL PHICLKAGSA LLDIVQARPS RFPISSQELF 1020 SILDDASEKT FLCGTAISMQ RYVFDGEAGK IGLESKNLVA CTSFLVEQIL LKAWHADKDA 1080 EALRLQKLLV EEEEAAQRRQ EELLERKRLK KLRQKEQKEK DQRHGEKVDV KENIDETLEA 1140 VPLVETSSPS ATFDSDTASS DALDHACLSL EPFHFSNTGE NADLESQTGV SFGHVDSASG 1200 PNVERQLVQG NGSRRAVARW HMPPKSRRGV PNGFHDGHSS QTAKHSSIQH HGNLRDVRAA 1260 SSGNRVWSRK PKPEYDGGSL KAGVQKEASE PDQIKNHEVL IGSIPVNLGN FCQESNNLAG 1320 VHDDHPSEKG QMLKDNSQDK TNKPDLVQSG TNRSTVKLWR PVSRNGTRGP TPIHNSSKES 1380 DINVVAEKGN SQSPYSENCK RSCVVDGHND GNGNGSTHPD ETQSLGFSSR AAEDFLAQRW 1440 KEAIAADHVE LVLFQDSEPP RCPDNQNDGE VGANHLLKSK RSILGNAENR LVDGEAFDLP 1500 TAGAAKVRRR TKQGKGVKIK YIPKHSTVA

Sequence ? help Back to Top

Protein Sequence Length: 1529 aa Download sequence

MGSVGEVGEG RVLSDVEETI FVAVGKDLKQ SETTLAWAVK NFAGKRICLL HVHKPSLLLS  60
LSEGIGSASK LKQGAVKALQ GAERTKLRKL LDQYRMVLTG AGVEANELWI EMGNVEEGIV  120
EIIARHHIRW LVMGAAADEH YSEGDREDES EIEIAPPLLL MNSAFGTEQP EHLRSESTDS  180
LRNLSSADAE EDTSELEEIS GRSTLLMIDA EGEANGESYH SVEQAIVDTK NLKQKEFEQT  240
TRRWKEEDDE MEAKCKAKAF ESLCTKEMSQ RKEMEEKLAR LKQEIDGVKD ESEEFIRQLS  300
MVEDKKLVLE KQLEASQCEV RELEEKIISA AGLLMSFREK RDTMKIEHRN AIRKVRRLET  360
MINGEAASFD QAEFPIFSFM EINEATHNFD PSWKIKEGRR GSVYKGILRH MHVAIKMLPS  420
YGSKTQLDFE HEVEVLSRVR HPNLVTLIGT CPESRSLVYE YLRNGCLEDL LACKDSTPPL  480
PWQIRTSIAT EICSALIFLH SNIPCLVHGN LKPSNILFDA NFVSKLVNLG ISSLIPQNEN  540
PTNFTKICSD PNGAHVYMDP EYLETGKLTP ESDVYSFGII LLQLLTARPL SGLVKDVKYA  600
LENDNFKALL DVSAGDWPLE QAKEMAYIAL RCCENKRLDR LDLLVAHEAM RASCAASASC  660
LVSKKLIRTP SHFLCPILQE VMQDPHIAAD GFTYEEEAIR GWLKSGHNTS PMTNLELEHC  720
KLVPNYALQP LYFLLANSLT LSGHLRLVNF LHFLGDFPSR QTLRISLPPA PIPADIPTSS  780
LFLNRSLLAP PLLSEVYSVS DQAWFCMFMI SSSGMPILDI WRSGGFVFLM SIAKPTTSDS  840
LYAMKSGEEN DSIDTIIRQV AKEPSISFSR AGDSPVPWIQ LLHALDQQEL PGWPLHSPIK  900
VQMQKCDKCP REFFSSINYR RHIRVHHRLK KLDKDSSKNR ELLREFWDKL SPEEAKEAVS  960
FNDVTLEEVP GSSIIKALTI LIRKPGFSSL PHICLKAGSA LLDIVQARPS RFPISSQELF  1020
SILDDASEKT FLCGTAISMQ RYVFDGEAGK IGLESKNLVA CTSFLVEQIL LKAWHADKDA  1080
EALRLQKLLV EEEEAAQRRQ EELLERKRLK KLRQKEQKEK DQRHGEKVDV KENIDETLEA  1140
VPLVETSSPS ATFDSDTASS DALDHACLSL EPFHFSNTGE NADLESQTGV SFGHVDSASG  1200
PNVERQLVQG NGSRRAVARW HMPPKSRRGV PNGFHDGHSS QTAKHSSIQH HGNLRDVRAA  1260
SSGNRVWSRK PKPEYDGGSL KAGVQKEASE PDQIKNHEVL IGSIPVNLGN FCQESNNLAG  1320
VHDDHPSEKG QMLKDNSQDK TNKPDLVQSG TNRSTVKLWR PVSRNGTRGP TPIHNSSKES  1380
DINVVAEKGN SQSPYSENCK RSCVVDGHND GNGNGSTHPD ETQSLGFSSR AAEDFLAQRW  1440
KEAIAADHVE LVLFQDSEPP RCPDNQNDGE VGANHLLKSK RSILGNAENR LVDGEAFDLP  1500
TAGAAKVRRR TKQGKGVKIK YIPKHSTVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1105	1112	ERKRLKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-111	C2H2 family protein