PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028176.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 1553aa MW: 173218 Da PI: 7.1003

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028176.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	361.1	1.6e-110	282	641	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lLl+cAe+v+ ++l a+ lL ++ el+sp g++ +R+ ayf AL++r+ +s+ ++y+ l+ ++ + +s++ ++ l+ ++ +sP++kfsh+t Nq PCP028176.1 282 GLLLQCAEFVAMDSLDDASDLLPEIAELSSPFGSSPERVGAYFSHALQTRVISSCLGTYSPLANKTLTLAQSQRIFNGLQSYNSISPLVKFSHFTSNQ 379 58****************************************************************999999999***************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 aI +a++ge++vH+iD+di+qGlQWp L++ LasR+++ s+RiTg+gs s+e l++tg+rLa+fA++lg+pfef++l k + +l++L ++p PCP028176.1 380 AIFQALDGEDHVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLQSTGRRLADFASSLGLPFEFQPLEGKIGSITDLSQLGIRP 473 *********************************************....9**********************988888999***** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 Ea++V++++ h l+d ++s +L+l+ sl+Pk++ ++eq+++h s+sFl rf+eal+yysalfd+l +l+++s er++vE++l+g ei+n PCP028176.1 474 SEATVVHWMH--HCLYDVTGSDLA----TLRLLGSLRPKLIMIAEQDLSH-SGSFLSRFVEALHYYSALFDALGDGLGADSLERHMVEQQLFGCEIRN 564 *****9..888877777777....******************.899**************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++a g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+ PCP028176.1 565 ILAVGGPKRTGEVK-VERWGDELKRVGFGPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 641 ****998887.9***********************************************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1553 aa Download sequence
MVKFLKPNKA VINLQGRYAG RKAVIVRAFD EGTRDRPYGH CLVAGIKKYP GKVIRKDSAK 60 KTAKKSRVKA FIKLVNYQHL MPTRYTLDVD LKDVVNVECL QTKDKKVTAL KEVKKRFEER 120 FKTGKNRWFF TKLRKQLYLK TSLECVYMDW FMLRFRGVWL SFSLFFVASR SKASELFIFS 180 LSTITHFLPP PPLPVMLQSL VPQSPIAAAT PSNNNPTSSS SSMKTKRVDR DLAGSGSGDS 240 DAEDPSFTKR PNSGRNFRES TADDRDTEPV AEGESDGLRL LGLLLQCAEF VAMDSLDDAS 300 DLLPEIAELS SPFGSSPERV GAYFSHALQT RVISSCLGTY SPLANKTLTL AQSQRIFNGL 360 QSYNSISPLV KFSHFTSNQA IFQALDGEDH VHVIDLDIMQ GLQWPGLFHI LASRSKKIRS 420 MRITGFGSSS ELLQSTGRRL ADFASSLGLP FEFQPLEGKI GSITDLSQLG IRPSEATVVH 480 WMHHCLYDVT GSDLATLRLL GSLRPKLIMI AEQDLSHSGS FLSRFVEALH YYSALFDALG 540 DGLGADSLER HMVEQQLFGC EIRNILAVGG PKRTGEVKVE RWGDELKRVG FGPVSLGGNP 600 AAQASLLLGM FPWKGYTLVE ENGCLKLGWK DLSLLTASAW QPPSKAATGS VNAVTKLSNA 660 SPPVPIALGT AFPNSNLLEN EDVGVSNTNV SVKKRVRDEN ALGAANDGTI GNDYQVKRLS 720 IEQIHMAIGR FLYEIQAPLD AVKNSVYFQP MIDAIASGGK ETVAPSYDDI RGWMLKNAVE 780 EMKSEIQQHK ETGARTGCSL LVNQWNSEKG RTLLNFAVYS PEGTIYLKSV DASYFIFSPD 840 ALFAFFKEVV EEIGVGHVLQ VITNSEEQFS VVGKKLMDTF PTLYWSPCSS ACIDSILEDF 900 GKVEWINSVI EQARSITRFI YKHVVILNMM RRYTFGNDIV RLGVSRFATN FMTLKQMADL 960 KYNLQSMVTS NEWTGCPFSK TPEGSAVLDI FSNQSFWSXX XXXXXXXXXX XXXXXXXXXX 1020 XEGFEPVAVS PQKQDPAWKH CQLFMKDQPN GVRVELKKCI YCGKLFQGGG ITRLKSHLAG 1080 RKGNGPTCDQ APPDVRIAML QSLDDGIAAF RQRKSRIVAN PHCGISEIDG SLGENGEYKL 1140 VVGHDSNAVV NDEEAGGMSG NGGIRLSDNL TNVPLEVDNS YRSNAQQGLI GVPKLDFSVD 1200 EEEDGGTSVD RRERRRGRPS GGATCSGSVH AGVTKLSSVS APFPISVGNA FPNSNLSQNE 1260 EVGIKLNFSV DQEDAGLSID RRKRPAMGYV FAGMYRAKET IKIELVKKEE YMVYWNIIDQ 1320 RWKKLWDFPL HAAGFYLNPK FFYSFKGDMH NEIVSRMFDC IERLVPDIEV QDEVIKEINM 1380 YKNAVGDLGR NLAVRARDNL RPAEWWSTYG GGCPNLARLA IRILSQTCSL VPCQENQIPF 1440 EQLHKTRNSV EQQRLNDLVF VQYNLKLKQK VHTHKEQKYV DPISFDRNSI AEEWVAEMEM 1500 HQEDTENPDW MSLDPPSENS RLLELSVDEV EELGSGYDDN EILNGLKVVK EEC

Sequence ? help Back to Top

Protein Sequence Length: 1553 aa Download sequence

MVKFLKPNKA VINLQGRYAG RKAVIVRAFD EGTRDRPYGH CLVAGIKKYP GKVIRKDSAK  60
KTAKKSRVKA FIKLVNYQHL MPTRYTLDVD LKDVVNVECL QTKDKKVTAL KEVKKRFEER  120
FKTGKNRWFF TKLRKQLYLK TSLECVYMDW FMLRFRGVWL SFSLFFVASR SKASELFIFS  180
LSTITHFLPP PPLPVMLQSL VPQSPIAAAT PSNNNPTSSS SSMKTKRVDR DLAGSGSGDS  240
DAEDPSFTKR PNSGRNFRES TADDRDTEPV AEGESDGLRL LGLLLQCAEF VAMDSLDDAS  300
DLLPEIAELS SPFGSSPERV GAYFSHALQT RVISSCLGTY SPLANKTLTL AQSQRIFNGL  360
QSYNSISPLV KFSHFTSNQA IFQALDGEDH VHVIDLDIMQ GLQWPGLFHI LASRSKKIRS  420
MRITGFGSSS ELLQSTGRRL ADFASSLGLP FEFQPLEGKI GSITDLSQLG IRPSEATVVH  480
WMHHCLYDVT GSDLATLRLL GSLRPKLIMI AEQDLSHSGS FLSRFVEALH YYSALFDALG  540
DGLGADSLER HMVEQQLFGC EIRNILAVGG PKRTGEVKVE RWGDELKRVG FGPVSLGGNP  600
AAQASLLLGM FPWKGYTLVE ENGCLKLGWK DLSLLTASAW QPPSKAATGS VNAVTKLSNA  660
SPPVPIALGT AFPNSNLLEN EDVGVSNTNV SVKKRVRDEN ALGAANDGTI GNDYQVKRLS  720
IEQIHMAIGR FLYEIQAPLD AVKNSVYFQP MIDAIASGGK ETVAPSYDDI RGWMLKNAVE  780
EMKSEIQQHK ETGARTGCSL LVNQWNSEKG RTLLNFAVYS PEGTIYLKSV DASYFIFSPD  840
ALFAFFKEVV EEIGVGHVLQ VITNSEEQFS VVGKKLMDTF PTLYWSPCSS ACIDSILEDF  900
GKVEWINSVI EQARSITRFI YKHVVILNMM RRYTFGNDIV RLGVSRFATN FMTLKQMADL  960
KYNLQSMVTS NEWTGCPFSK TPEGSAVLDI FSNQSFWSXX XXXXXXXXXX XXXXXXXXXX  1020
XEGFEPVAVS PQKQDPAWKH CQLFMKDQPN GVRVELKKCI YCGKLFQGGG ITRLKSHLAG  1080
RKGNGPTCDQ APPDVRIAML QSLDDGIAAF RQRKSRIVAN PHCGISEIDG SLGENGEYKL  1140
VVGHDSNAVV NDEEAGGMSG NGGIRLSDNL TNVPLEVDNS YRSNAQQGLI GVPKLDFSVD  1200
EEEDGGTSVD RRERRRGRPS GGATCSGSVH AGVTKLSSVS APFPISVGNA FPNSNLSQNE  1260
EVGIKLNFSV DQEDAGLSID RRKRPAMGYV FAGMYRAKET IKIELVKKEE YMVYWNIIDQ  1320
RWKKLWDFPL HAAGFYLNPK FFYSFKGDMH NEIVSRMFDC IERLVPDIEV QDEVIKEINM  1380
YKNAVGDLGR NLAVRARDNL RPAEWWSTYG GGCPNLARLA IRILSQTCSL VPCQENQIPF  1440
EQLHKTRNSV EQQRLNDLVF VQYNLKLKQK VHTHKEQKYV DPISFDRNSI AEEWVAEMEM  1500
HQEDTENPDW MSLDPPSENS RLLELSVDEV EELGSGYDDN EILNGLKVVK EEC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	116	KKVTALKEVKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	1e-168	GRAS family protein