PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028144.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 354aa MW: 39888.3 Da PI: 6.3572

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028144.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.8	7e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++q+G g+W++ ++ g++R++k+c++rw +yl PCP028144.1 14 KGPWTPEEDQKLVQYIEQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.7	4.9e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W+tIa ++ gRt++++k++w+++l PCP028144.1 67 RGKFSEEEEQTILHLHSILGNK-WSTIATHLD-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGRTPCCDES GLKKGPWTPE EDQKLVQYIE QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEQTILH LHSILGNKWS TIATHLDGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHQPRT DLFSNLSQLL ALANLQDLMQ QYQPLEHINQ HAATLHADQA VQLAKLQYIQ 180 HLLQSVAYTS NNDSYTQNRS TEMEMDDQAF NLLNSINIPP IKENPNFNSL QLENPSSFSH 240 GYGGNSSQLL HHHQTLLPHG LADPQVPFSS LPSLNNSDHE MGQGSNFTVV RSQENNPSDE 300 SPWFNNLLSP TAPSIPPTSN VPGDACCSRS SYGGRSSDSS SYWPDLFLED ANYG

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGRTPCCDES GLKKGPWTPE EDQKLVQYIE QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQTILH LHSILGNKWS TIATHLDGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DLFSNLSQLL ALANLQDLMQ QYQPLEHINQ HAATLHADQA VQLAKLQYIQ  180
HLLQSVAYTS NNDSYTQNRS TEMEMDDQAF NLLNSINIPP IKENPNFNSL QLENPSSFSH  240
GYGGNSSQLL HHHQTLLPHG LADPQVPFSS LPSLNNSDHE MGQGSNFTVV RSQENNPSDE  300
SPWFNNLLSP TAPSIPPTSN VPGDACCSRS SYGGRSSDSS SYWPDLFLED ANYG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-95	MYB family protein