PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027972.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRF

Protein Properties

Length: 527aa MW: 56812.2 Da PI: 7.6066

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027972.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.4	1.4e-24	142	185	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e PCP027972.1 142 DPEPGRCKRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKHVE 185 79****************************************98 PP
2	QLQ	56	1.2e-19	81	114	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT+aQ+ +L++Q+++yKy++a++PvP +Ll+++ PCP027972.1 81 PFTNAQWKELERQAMIYKYMVASLPVPRDLLFPL 114 8******************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MMMVHHDNHR RPFPSSDTTP VPVAGGPTCN RPPPTYDDVV AAGTGTGSSS GGGAVLRNLQ 60 PFDIRTNTRS AGGMTTSFGF PFTNAQWKEL ERQAMIYKYM VASLPVPRDL LFPLTTTPPG 120 TTAASQSPLG GRFNLRLSNS TDPEPGRCKR TDGKKWRCSR DVAPDQKYCE RHMHRGRPRS 180 RKHVEVHATA ASKRVRHDIN LAPPLPTVSP ETVSISNPAN GINKNVCSSQ FMGSNLRPYH 240 PSPVFPERDG AKFAYFESMN SASANREPRN LDWLIMKGEP VSDAQWHQLM HSKTELSTKI 300 PFFDPNSSVF SNRSEEESFL NLNSFTNFSA GEDQQDGGEC NLFLNPDVAP LESPLLEETP 360 RYFIDAWSKT VTDEETMAAN SVNNNDNSSA PSSGQLSPSS LTLSMGGYNS INEEMGQTQM 420 SLGTSGNGMM PRGSTWPASW VASAPGGPLA EVLKPTTSAA SNPSSPVTTG TTTNGELGSP 480 LAVSSPSGVL QKKFVSPSDS SGNSSPTLAS SRAKPEIVSL WLNQSKA

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MMMVHHDNHR RPFPSSDTTP VPVAGGPTCN RPPPTYDDVV AAGTGTGSSS GGGAVLRNLQ  60
PFDIRTNTRS AGGMTTSFGF PFTNAQWKEL ERQAMIYKYM VASLPVPRDL LFPLTTTPPG  120
TTAASQSPLG GRFNLRLSNS TDPEPGRCKR TDGKKWRCSR DVAPDQKYCE RHMHRGRPRS  180
RKHVEVHATA ASKRVRHDIN LAPPLPTVSP ETVSISNPAN GINKNVCSSQ FMGSNLRPYH  240
PSPVFPERDG AKFAYFESMN SASANREPRN LDWLIMKGEP VSDAQWHQLM HSKTELSTKI  300
PFFDPNSSVF SNRSEEESFL NLNSFTNFSA GEDQQDGGEC NLFLNPDVAP LESPLLEETP  360
RYFIDAWSKT VTDEETMAAN SVNNNDNSSA PSSGQLSPSS LTLSMGGYNS INEEMGQTQM  420
SLGTSGNGMM PRGSTWPASW VASAPGGPLA EVLKPTTSAA SNPSSPVTTG TTTNGELGSP  480
LAVSSPSGVL QKKFVSPSDS SGNSSPTLAS SRAKPEIVSL WLNQSKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	4e-35	GRF family protein