PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027843.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family RAV
Protein Properties Length: 314aa    MW: 35696.5 Da    PI: 8.6051
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027843.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.3e-133179155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGV    ++grW A+I++      + r++lg+f+ +eeAak ++ a +k++g
  PCP027843.1 31 SRYKGVV-PQSNGRWGAQIYEK-----SNRVWLGTFDNEEEAAKTYDIASLKIRG 79
                 78****7.7779*********4.....6***********************9997 PP
2B3924.5e-29168271199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f+kv tpsdv++++r+v+pk++ae+h       g     +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+++  +++
  PCP027843.1 168 FEKVATPSDVGRLNRMVIPKRHAEKHfqvhqsvG---FgKGVLLKFEDEVGKVWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKVGDVVRFERSVGEDK 262
                  89************************77665442...04789*************************************************8866999 PP

                  ..EEEEE-S CS
           B3  91 elvvkvfrk 99 
                  +l++  +++
  PCP027843.1 263 KLFIDCRSR 271
                  999998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MDLISCWSAS TRDYSTVDQA NGASSNKLPS SRYKGVVPQS NGRWGAQIYE KSNRVWLGTF  60
DNEEEAAKTY DIASLKIRGL DAITQSSRNQ MKPYECDVTE ALFLESHSKA EIVDMLRKHS  120
YANELEMYKH KLYNGCAACA LGLDDGGRRM KCYHDLMDTC SRERELLFEK VATPSDVGRL  180
NRMVIPKRHA EKHFQVHQSV GFGKGVLLKF EDEVGKVWRF GYCYWSSSQS YVLSKGWIRF  240
VKEKKLKVGD VVRFERSVGE DKKLFIDCRS RNLDISGIGE MHGTVGDPPA TVQDDGVVRL  300
FGVNISRKHV HCRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.27e-96RAV family protein