PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027842.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family RAV
Protein Properties Length: 311aa    MW: 35315.2 Da    PI: 9.0644
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027842.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.9e-123179155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 sgykGV    ++grW A+I++      + r++lg+f+ +eeAak +  a +k++g
  PCP027842.1 31 SGYKGVV-PQSNGRWGAQIYEK-----SHRVWLGTFDDEEEAAKTYNIASLKFRG 79
                 89****7.7779*********4.....6*******************99999987 PP
2B390.61.2e-28165267198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+kv tpsdv++++r+v+pk++ae+h       g    +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+++  ++++
  PCP027842.1 165 FEKVATPSDVGRLNRMVIPKQHAEKHfqvhlsvG--FGKGVLLKFEDEVGNVWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKAGDVVRFERSVGEDKK 260
                  89************************88887652..237899************************************************88668888 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  +++  + 
  PCP027842.1 261 MFIDCRP 267
                  8887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MDLMSCWNRS TRDYSPVTGA RAASSNKLPS SGYKGVVPQS NGRWGAQIYE KSHRVWLGTF  60
DDEEEAAKTY NIASLKFRGL DAITNFSRNQ MTPYEFDVTE ALFLESHSKA EIVDMLRKHS  120
YANELEMYKH KLYNGGALGL DAGGKRMKCH LDLMDTCSSE RELLFEKVAT PSDVGRLNRM  180
VIPKQHAEKH FQVHLSVGFG KGVLLKFEDE VGNVWRFGYC YWSSSQSYVL SKGWIRFVKE  240
KKLKAGDVVR FERSVGEDKK MFIDCRPRNV DVSGIREMHS RVGEPLGAVQ DDGMVRLFGV  300
NIQPSTGPRF Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-99RAV family protein