PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027788.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 305aa    MW: 30510.8 Da    PI: 6.1335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027788.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007211233223
                  EETTTT.EEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCg.ksFsrksnLkrHirtH 23 
                  +Cp C+   Fs++  L  H+r+H
  PCP027788.1 211 TCPVCNrSDFSSWKALFGHQRSH 233
                  6*****889*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MTNSNTNTTT NQGSSAEGQQ PLNENVSSNV TGAAPTAPPS THAPTPTPPP PPQSTGQVNA  60
GGGDGGFLRS SGTPPVRTHL TPGQFNVGGG FATGGSSVTP PGPNKGSPGR GSPSPSRGTS  120
TPRRASPSGG RRTPSRGSKS PPSGRGSPSS LGRGSSAAAG NNSQIGGSSF TPVRIEISLG  180
GGLAVEGSMA VGGQLGKRKA EVKAPEGMTP TCPVCNRSDF SSWKALFGHQ RSHPERPYRG  240
AFPPPGQQQG EASNAANVRE ARDVEEDNEG RGGIDLNMPP PDDDDDDDVT DDNMDGGDGG  300
GGAEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.17e-09C2H2 family protein