PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027692.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 647aa    MW: 71165.2 Da    PI: 5.1655
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027692.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.49.4e-1372796381374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv+ L++cAeav++++++la+al++++  la +++ +m+++a++f+eALa+r++r    +y    p++  +++ s+    +  f+e++P+lkf+h+ta
  PCP027692.1 279 LVHGLMACAEAVQQNNFNLAKALVTQIGYLAGSQAGAMRKVATFFAEALAHRIFR----VY----PQPPIDHSFSDM--LQMHFYETCPYLKFAHFTA 366
                  6899***************************************************....44....444443334444..4446*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIle+++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+s++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L++
  PCP027692.1 367 NQAILESLQGKTRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPSSDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLEL 464
                  ************************************************************************************************** PP

         GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +p   E++aVn+v++lh+ll++++++e+    vL++vk+++P++++vveqea+hn++ F++rf e+l+yys+lfdsle +   ++++++++++++lg+
  PCP027692.1 465 RPseVESVAVNSVFELHKLLARPGAIEK----VLSVVKQMKPEILTVVEQEANHNGPVFMDRFNESLHYYSTLFDSLEGS---ANSQDKVMSEVYLGK 555
                  **88899*********************....**********************************************99...599999********* PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i+nvvaceg +r+erhetl +Wr+r+++a F pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  PCP027692.1 556 QICNVVACEGLDRVERHETLTQWRARFDSADFVPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWK 638
                  **********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    
MKGEHQIHQL NQYPLPQQHP DPSMASTSAG VDFGKAKMWP DESQRMDGGM DELLAVLGYK  60
VRSSDMADVA QKLEQLEEFM GCAQEDGLSQ LASDTVHYNP SDLSTWLETM ISEINVPPPN  120
FDPLMGGAVA GIQPSQQQVQ LVDDPFLAPA ESSITTVDFP DHRKSKSIST SPTQNVFEDC  180
NSSSSYYDFK SIPGNAVYYD FKSIPGNAVF TKTRPDSSSR EPKRLKSSSG SSPSDLLFNR  240
PAASSLPQPQ QPISLPAPAE SSSTRPALLV DSQENGVRLV HGLMACAEAV QQNNFNLAKA  300
LVTQIGYLAG SQAGAMRKVA TFFAEALAHR IFRVYPQPPI DHSFSDMLQM HFYETCPYLK  360
FAHFTANQAI LESLQGKTRV HVIDFSMNQG MQWPALMQAL ALRPGGPPAF RLTGIGPPSS  420
DNSDHLQEVG WKLAQLAETI HVEFEYRGFV ANSLADLDAS MLELRPSEVE SVAVNSVFEL  480
HKLLARPGAI EKVLSVVKQM KPEILTVVEQ EANHNGPVFM DRFNESLHYY STLFDSLEGS  540
ANSQDKVMSE VYLGKQICNV VACEGLDRVE RHETLTQWRA RFDSADFVPV HLGSNAFKQA  600
SMLLALFAGG DGYRVEENDG CLMLGWHTRP LIATSAWKAS SNSVMAH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein