PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027684.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 450aa    MW: 48819.2 Da    PI: 5.0727
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027684.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.42e-112884473374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf+ AL++r+++s+ + y+ l++++ +  +s++ ++al+ ++ +sP++kfsh+t Nq
  PCP027684.1  88 GLLLQCAECVAMDKLDDASDLLPEIAELSSPFGSSPERVGAYFAHALQTRVVSSCLGAYSPLTAKTLTLAQSQRIFNALQSYNSISPLVKFSHFTSNQ 185
                  58******************************************************************99**************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                  aI +a++ge+++H+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k  +  el++L +kp
  PCP027684.1 186 AIFQALDGEDHIHVIDLDIMQGLQWPGLFNILASRTKKIQSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFQPLEGKIGSITELNQLGIKP 279
                  *************************************************....9**************************988888999********* PP

         GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                   Ea+++++++  h l+d ++s        L+l+ sl+Pk+++++eq+++h s+sFl rf+eal+yysalfd+l  +l+++s er++vE++l+g ei+n
  PCP027684.1 280 SEATVIHWMH--HCLYDVTGSDLA----ALRLLGSLRPKLITIAEQDLSH-SGSFLGRFVEALHYYSALFDALGDGLGEDSLERHMVEQQLFGCEIRN 370
                  *********9..888877777777....9*********************.899******************************************** PP

         GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++a  g +r+ + + +e+W + l+++GF+ v+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  PCP027684.1 371 ILAVGGPKRTGEVK-VERWGDELKRVGFRGVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 447
                  ********998887.9*************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MLQSLIPQSP IAAANPNNNN PTSSSSSSMK TKRVDGDLAG SGSGDCDAED PSFTKRLNSG  60
RNFREKTADD RDTEPVEEGE SAGLRLLGLL LQCAECVAMD KLDDASDLLP EIAELSSPFG  120
SSPERVGAYF AHALQTRVVS SCLGAYSPLT AKTLTLAQSQ RIFNALQSYN SISPLVKFSH  180
FTSNQAIFQA LDGEDHIHVI DLDIMQGLQW PGLFNILASR TKKIQSMRIT GFGSSSELLE  240
STGRRLADFA SSLGLPFEFQ PLEGKIGSIT ELNQLGIKPS EATVIHWMHH CLYDVTGSDL  300
AALRLLGSLR PKLITIAEQD LSHSGSFLGR FVEALHYYSA LFDALGDGLG EDSLERHMVE  360
QQLFGCEIRN ILAVGGPKRT GEVKVERWGD ELKRVGFRGV SLGGNPAAQA SLLLGMFPWK  420
GYTLVEENGC LKLGWKDLSL LTASAWQPLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein