PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027437.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 577aa MW: 64754 Da PI: 4.641

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027437.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.5	3.2e-29	243	301	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++++ve+s+++p+++++tY+g+H+h PCP027437.1 243 ADLWAWRKYGQKPIKGSPHPRNYYRCSSSkGCPARRQVEQSTTEPNIFIVTYSGDHTHA 301 699**********************998**************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MADDWDLYAV VRGCKSTNQT TRNITITATG IAPTNPIHTP PDEFENDPFW ELLDSDELTD 60 QLFSFTNLDD PKEASGFQEL QQSFFRNPTT TTNNDHNPTT NNTTFGPNNI IPNSTTISDF 120 GGSSGSGQHH LQHQQQQQQH HAQLQQQQLQ QQQHLSMPTR ITRGIPAPGF RGIYGQQQQQ 180 QIIQPGDQNL QPEQLQTQQG FRRPRFINPA YPHPRLPTRP QRRRKTQQKK NVHEVKAEDL 240 ISADLWAWRK YGQKPIKGSP HPRNYYRCSS SKGCPARRQV EQSTTEPNIF IVTYSGDHTH 300 ARPTHRNSLA GSSRNKLSAA SASQNQPINN DSGSTAVPNP SSPTTGLPMT VQAEAVPVAN 360 KVNSDNSIDK ENEEFDEEEE TDHENEDENE VEDDDVVIPD MDMSDEIFLG LKELGGTSSN 420 GTGSGSFSGL DVVPNAREVL IELYSKTLKE IQAVPEDEGY RKAVESFTRH RLNVCREEED 480 WEAIEKKLGC GQVEELIEEA RDELTLIGKM IEWDPWGVPD DYECEVIEND APVPKHVPLH 540 RPGPLPEEFY KTLDGLTSNQ PKLDDAKVAS IGSEAKE

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MADDWDLYAV VRGCKSTNQT TRNITITATG IAPTNPIHTP PDEFENDPFW ELLDSDELTD  60
QLFSFTNLDD PKEASGFQEL QQSFFRNPTT TTNNDHNPTT NNTTFGPNNI IPNSTTISDF  120
GGSSGSGQHH LQHQQQQQQH HAQLQQQQLQ QQQHLSMPTR ITRGIPAPGF RGIYGQQQQQ  180
QIIQPGDQNL QPEQLQTQQG FRRPRFINPA YPHPRLPTRP QRRRKTQQKK NVHEVKAEDL  240
ISADLWAWRK YGQKPIKGSP HPRNYYRCSS SKGCPARRQV EQSTTEPNIF IVTYSGDHTH  300
ARPTHRNSLA GSSRNKLSAA SASQNQPINN DSGSTAVPNP SSPTTGLPMT VQAEAVPVAN  360
KVNSDNSIDK ENEEFDEEEE TDHENEDENE VEDDDVVIPD MDMSDEIFLG LKELGGTSSN  420
GTGSGSFSGL DVVPNAREVL IELYSKTLKE IQAVPEDEGY RKAVESFTRH RLNVCREEED  480
WEAIEKKLGC GQVEELIEEA RDELTLIGKM IEWDPWGVPD DYECEVIEND APVPKHVPLH  540
RPGPLPEEFY KTLDGLTSNQ PKLDDAKVAS IGSEAKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	226	QRRRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	2e-40	WRKY family protein