PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026914.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 547aa    MW: 59886.9 Da    PI: 5.7921
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026914.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.52.2e-1301575211374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                  lv+lL++cAe v+ gdl+la +l+++++ l  + ++   + ++a +f  AL++r+++  +      ++  +++ ++ e+   +++f+e++P+lkf+h+
  PCP026914.1 157 LVHLLVTCAESVQRGDLALAGSLIEKMQALltRVNTSCGIGKVAGHFIDALSRRIFS--P------QTVGSASGSVHENELLYHYFYEACPYLKFAHF 246
                  68****************************54444446899***************9..3......333334445778888999************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v f f+ ++a+rled+++++L
  PCP026914.1 247 TANQAILEAFDGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVGFAFRGVAASRLEDVKPWML 344
                  ************************************************************************************************** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+p+Ea+aVn+++qlhrll ++++ +s+++ vL+ +++l+Pk+v vveqeadhn++ Fl+rf+eal+yys +fdslea    + + ++ + + +++r
  PCP026914.1 345 QVNPKEAVAVNSIMQLHRLLGSDTNRNSPIEMVLSWIRNLNPKIVAVVEQEADHNKPGFLDRFTEALYYYSNMFDSLEAC---AMQPEKALAEIYIQR 439
                  *****************************************************************************999...467777788888*** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+nvv+cega+r+erhe l kWr rle+aGF+p++l+++a+kqa++ll  ++ +gyrvee++g+l+lgW++rpL+++S W+
  PCP026914.1 440 EICNVVCCEGAARVERHEPLDKWRIRLEQAGFRPLHLGSNAYKQASMLLTLFSAEGYRVEENQGCLTLGWHNRPLIAASGWQ 521
                  *********************************************************************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MGPYGSTTCS GVSSSASSSS SSSVTKPPAD IDGCLADAGY KVRSSDLRHV AQRLERLETV  60
MVNSPGDLSH LASDAVLYNP SDLATWVDSL LTEFNHQPLI SLPSDLDFSD GAVINNPAAL  120
PRETWTDNSA IIAAAPQQNH NQLTVVTAME EDSGIRLVHL LVTCAESVQR GDLALAGSLI  180
EKMQALLTRV NTSCGIGKVA GHFIDALSRR IFSPQTVGSA SGSVHENELL YHYFYEACPY  240
LKFAHFTANQ AILEAFDGHD CVHVIDFNLM HGLQWPALIQ ALALRPGGPP LLRLTGIGPP  300
SPDGRDSLRE IGLRLAELAR SVNVGFAFRG VAASRLEDVK PWMLQVNPKE AVAVNSIMQL  360
HRLLGSDTNR NSPIEMVLSW IRNLNPKIVA VVEQEADHNK PGFLDRFTEA LYYYSNMFDS  420
LEACAMQPEK ALAEIYIQRE ICNVVCCEGA ARVERHEPLD KWRIRLEQAG FRPLHLGSNA  480
YKQASMLLTL FSAEGYRVEE NQGCLTLGWH NRPLIAASGW QVMSMPEATT NQQAVGIINQ  540
NNNPNHI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-142GRAS family protein