PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026792.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 652aa    MW: 71335 Da    PI: 7.5425
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026792.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.52.2e-1062826522374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  ++ L+e+A+a+s+g+ e+a ++Lar+  +   +p+ ++ qRl  ++  AL++r++     + ++ p++e      +e+  + +l++e+sP++k+++++
  PCP026792.1 282 KQSLMEAATAISEGKSEAAAEILARMMATqvPNPRPNSEQRLLEFLGLALKSRVNP----IDNSPPANELF---GQEHSGSIQLLYELSPCFKLGFMA 372
                  578**********************998854666779******************9....44433433333...9999******************** PP

         GRAS  98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  aN+aIlea+ ++    ++vH+iDfdi++G+Q++ L+qaL++R++  p  ++iT+v++  +g + +l+ ++++L++ Ae+lgv++efnv v++++ +l+
  PCP026792.1 373 ANRAILEATLTDqsatNKVHVIDFDIGHGGQYMLLFQALSTRQNVRPaVVKITTVAD--NGGEGRLRMVRQKLSQAAERLGVRLEFNV-VSQKIGELN 467
                  ********9777678899*************************655549********..77**************************9.7******** PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   ++L ++p+E +aVn++++l++++desvs++++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e++ yy al++s+ea++pre+ er+k E++
  PCP026792.1 468 RDSLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQEMNTNTAPFMARVNECCAYYGALLESIEATVPRENPERVKAEEA 565
                  ************************************************************************************************** PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   l+r++vn vaceg++r+er+e ++kWr+r+++aGF+  p++ +++++ k  l+  +  + g++v+ee+g +++gW +r+L+++SaWr
  PCP026792.1 566 -LSRKLVNSVACEGRDRVERCEVFGKWRARMGMAGFELRPMGPNMTESLKNRLESGNraNSGFTVKEEKGGICFGWISRTLTVASAWR 652
                  .**************************************************99987767899*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    
MQSRGFNGGG GGGVPDFYTN GRSISISAAM NGHNPSQNNP YHRSQLPSLF MDPTASQIAR  60
QTQFQPQTQN PAAGLIGKRT LAEFQAHQQN HYNPHQNYHQ NPGQNLYLRS LKPRTFQHSS  120
PISPLSPIDF SSGSAITGSD SSSSSSSILS HQRFGLPLLQ QLRHQPINQT APPAMSYVNN  180
LVPNNPVQNN PGQTRGLDSE KKMISNRLQE LEKQLLDDND EDDEGDAVSV ITKTNSEWSE  240
TIQNLMGSAA PSQCQKPISP SPTSSSSSSS SVASPASSTC SKQSLMEAAT AISEGKSEAA  300
AEILARMMAT QVPNPRPNSE QRLLEFLGLA LKSRVNPIDN SPPANELFGQ EHSGSIQLLY  360
ELSPCFKLGF MAANRAILEA TLTDQSATNK VHVIDFDIGH GGQYMLLFQA LSTRQNVRPA  420
VVKITTVADN GGEGRLRMVR QKLSQAAERL GVRLEFNVVS QKIGELNRDS LGCEPDEPIA  480
VNFAFKLYSM PDESVSTDNP RDELLRRVKG LAPRVVTLVE QEMNTNTAPF MARVNECCAY  540
YGALLESIEA TVPRENPERV KAEEALSRKL VNSVACEGRD RVERCEVFGK WRARMGMAGF  600
ELRPMGPNMT ESLKNRLESG NRANSGFTVK EEKGGICFGW ISRTLTVASA WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-163GRAS family protein