PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026749.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 281aa MW: 31686.7 Da PI: 6.2792

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026749.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.8	1.8e-54	93	197	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql+ fw++q ieka+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi PCP026749.1 93 QLQEFWSDQmqdIEKASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 190 89***9977889******************************************************************************** PP NF-YC 96 vprdelk 102 +prdelk PCP026749.1 191 IPRDELK 197 **875 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MDHSEQTLQQ QQQQQQQHHQ QQPAVGVVAG SGQMTSYPPP SYQTAPMVAS GTPAVSVPSP 60 THPPTTFPDP SHQLAYQKIQ HFHHQQQVQQ QMQLQEFWSD QMQDIEKASD FKNHSLPLAR 120 IKKIMKADED VRMISAEAPV IFAKACEIFI LELTLRSWIH TEENKRRTLQ KNDIAAAISR 180 TDVFDFLVDI IPRDELKEEA LGVTKATLPV VGSPADVPYY YVPQQHPVGA PGMIMGKPVD 240 QAAMYASQQP RPPVSFMPWA QSQPQQPQQQ QQQAQQQQTD T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	172	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	7e-78	NF-YC family protein