PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026620.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 712aa MW: 81116.9 Da PI: 5.6034

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026620.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.1	4.8e-31	88	182	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+e++ k ++k+rr ra tr gCka ++v+k+++g+w+v kle++HnHel+ PCP026620.1 88 NFYNAYAKQTGFSIRVNSYYRSKKDNSIISREFCCSKEGFRREKNAKrdsgeDVKRRRARAITREGCKALMTVRKRENGRWYVVKLEKDHNHELV 182 6****************************************999999999999************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MQEGIEIEQY IIMEAEPSGE CGGKVVDSNV TLEGESYGHC VVEDVEAPVV LDDGKEGDVE 60 IDLSRLVGGG IIEPTLGMEF TSEDDARNFY NAYAKQTGFS IRVNSYYRSK KDNSIISREF 120 CCSKEGFRRE KNAKRDSGED VKRRRARAIT REGCKALMTV RKRENGRWYV VKLEKDHNHE 180 LVTPAMRHFL RSHKQDFDPD KSCSNSFNSP GLSLDASADV LADSGSFGKM AFAVQSDVNY 240 IGTGRLSTFG IDAQSLLGFF KVMQASDPAF YYAIQVDEEE RLSSVFWVDT RSRIAYNCFS 300 DVVAFDTTYQ VNQYKMPFAP ITGVNHHKHS VLFGCALLAD ESESTFIWLF TTWLEAMSGR 360 QPGLIITDYD PTISRAVQQV FPQSIHRFCK WHIISKMPKE MGNVYSVTPR TFQVEFDRCI 420 NKSETPDEFE SAWQMLLDKY SLRESHRLQS LYIDRKLWVP VYIRDTFFAG LYAAQRSGSV 480 NSLFDGYVNA GTTLQDFAAQ YEKALDERYE KEAKAEFETF HTKPVLKTPL PVEKQGADIY 540 TRSMFTIFQD EVFESLVFAV KLRAEDGGTR TYEIARFNEE HEIYFVAFNI AEQLASCSCK 600 MFEFEGILCR HVLAVFKATN VFTLPPCYIL KRWTRNAKEE AMLDVLPCVE LQGNSQKGRN 660 LQYNVLYQEA IKCAEEGMAC DQIFKVALNA LREARVKIVS AKQNAMKSMT QN

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MQEGIEIEQY IIMEAEPSGE CGGKVVDSNV TLEGESYGHC VVEDVEAPVV LDDGKEGDVE  60
IDLSRLVGGG IIEPTLGMEF TSEDDARNFY NAYAKQTGFS IRVNSYYRSK KDNSIISREF  120
CCSKEGFRRE KNAKRDSGED VKRRRARAIT REGCKALMTV RKRENGRWYV VKLEKDHNHE  180
LVTPAMRHFL RSHKQDFDPD KSCSNSFNSP GLSLDASADV LADSGSFGKM AFAVQSDVNY  240
IGTGRLSTFG IDAQSLLGFF KVMQASDPAF YYAIQVDEEE RLSSVFWVDT RSRIAYNCFS  300
DVVAFDTTYQ VNQYKMPFAP ITGVNHHKHS VLFGCALLAD ESESTFIWLF TTWLEAMSGR  360
QPGLIITDYD PTISRAVQQV FPQSIHRFCK WHIISKMPKE MGNVYSVTPR TFQVEFDRCI  420
NKSETPDEFE SAWQMLLDKY SLRESHRLQS LYIDRKLWVP VYIRDTFFAG LYAAQRSGSV  480
NSLFDGYVNA GTTLQDFAAQ YEKALDERYE KEAKAEFETF HTKPVLKTPL PVEKQGADIY  540
TRSMFTIFQD EVFESLVFAV KLRAEDGGTR TYEIARFNEE HEIYFVAFNI AEQLASCSCK  600
MFEFEGILCR HVLAVFKATN VFTLPPCYIL KRWTRNAKEE AMLDVLPCVE LQGNSQKGRN  660
LQYNVLYQEA IKCAEEGMAC DQIFKVALNA LREARVKIVS AKQNAMKSMT QN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein