PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026617.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 538aa MW: 60276.2 Da PI: 7.9217

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026617.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	116	135	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F++ L +H r PCP026617.1 116 SCEVCGKGFKTLRALATHSR 135 6*****************65 PP
2	zf-C2H2	11.1	0.0013	379	401	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k+F + L H+r H PCP026617.1 379 HKCRLCNKVFGTYQALGGHQRIH 401 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MEHVCKHCKK SFLSGRVLGG HMRCHGAKKS AKTEKNIEMC RAYSEVEDDD HAGYGLRVNP 60 KKSWKFSGHS KFEASAGEEK EIVCRCRVCG KGFDSMRAMF GHMRHHSGRE RKETQSCEVC 120 GKGFKTLRAL ATHSRCHSKS IRGTDGLETV SSSKKLSVDC CQYSSETMGL IRRKRSKRLR 180 YKITNSSCSF SSFSVNESKY VAEFGEEVVE GAICLMIISG CGSNWGRISS VTESSDNNSL 240 SLEVQSPGLK NWIMGNKGGV SVCDDTVKLV DCISDCKNVS VEKKVFEFSE NNSGFANDEE 300 KNVEMEGRFF RGVGYKRPRL DEESVFGLCD TEMEMNVDII EEVESDVAAF RSMKSGLNKP 360 KLYATESEVF ADSQKKREHK CRLCNKVFGT YQALGGHQRI HKSTNTTSVV NIEDYEDGIP 420 TNKFSKMGYS CKLAKTECSD SSAAEEEMER VIENKGHKCS ICLKVFATGQ ALGGHKRVHF 480 GKDHETGAEE SRVLKQQISN ICDAFDLSRP IENGHVDFKS WWPVNEHKQE LLMDLMPN

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MEHVCKHCKK SFLSGRVLGG HMRCHGAKKS AKTEKNIEMC RAYSEVEDDD HAGYGLRVNP  60
KKSWKFSGHS KFEASAGEEK EIVCRCRVCG KGFDSMRAMF GHMRHHSGRE RKETQSCEVC  120
GKGFKTLRAL ATHSRCHSKS IRGTDGLETV SSSKKLSVDC CQYSSETMGL IRRKRSKRLR  180
YKITNSSCSF SSFSVNESKY VAEFGEEVVE GAICLMIISG CGSNWGRISS VTESSDNNSL  240
SLEVQSPGLK NWIMGNKGGV SVCDDTVKLV DCISDCKNVS VEKKVFEFSE NNSGFANDEE  300
KNVEMEGRFF RGVGYKRPRL DEESVFGLCD TEMEMNVDII EEVESDVAAF RSMKSGLNKP  360
KLYATESEVF ADSQKKREHK CRLCNKVFGT YQALGGHQRI HKSTNTTSVV NIEDYEDGIP  420
TNKFSKMGYS CKLAKTECSD SSAAEEEMER VIENKGHKCS ICLKVFATGQ ALGGHKRVHF  480
GKDHETGAEE SRVLKQQISN ICDAFDLSRP IENGHVDFKS WWPVNEHKQE LLMDLMPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-14	C2H2 family protein