PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026506.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 299aa    MW: 33337.8 Da    PI: 7.3976
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026506.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002882104123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C++ F++   L  H++ H
  PCP026506.1  82 FQCSYCSRKFNSYQALGGHQSAH 104
                  89**************9999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MEAKDEMDHD LLTLMNPPPP PPPPPPYPRH PNSSLSPCPS HFPFNNLPPS IRPSSHQIPN  60
QPPATPHACR SSSSTAAATR NFQCSYCSRK FNSYQALGGH QSAHKSERAA ARRSFVGAHK  120
SERAAPRHPH HVPTFNVPPA PSQYQIMPIN VPRQPHDVDD HAQHYSYGPH QYHQLQQSHQ  180
QQQPEAAVRD SSSSFLIETG HIMQQDNQPP KYSWAMDLSN ISTTNYHPHH LIPAAAFTYS  240
LPQMIHDPTT IELPQPLFSS APPSSHTHQY YHGHPQNATA AHSPGDNDTH HSLDLSLHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-10C2H2 family protein