PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026219.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 679aa MW: 78037.8 Da PI: 6.7755

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026219.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.1	1.4e-18	42	125	4	90
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 n+YA + GFs+rk + ++ ++n+ + +r+++Cskeg++ +e+ e ++ +r trtgCka ++ + e +g+w+++ ++ HnHe+a PCP026219.1 42 NTYAFNKGFSIRKGHLRRDSQNN-VRQREYTCSKEGFQVDEDLC-EARKVRRLDTRTGCKAVIRFNVE-NGVWKLSYINPIHNHEFA 125 89**************97766.************9998.899999************9.*************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MDSDSQKESL EKSDNDEVFG EIDELRVGME VSDEAEAYQL CNTYAFNKGF SIRKGHLRRD 60 SQNNVRQREY TCSKEGFQVD EDLCEARKVR RLDTRTGCKA VIRFNVENGV WKLSYINPIH 120 NHEFARPEER QFLRSGRNIP SVRATILGSS KVDGSIRPAK LQSYSGKEFG SAENVGVSNK 180 DSHNCLQRGK DEWIAGDGQS LINYFKLKQM EDPSFFYSVQ VDQFNRITNY FWRDGRSKLD 240 YDCFADVVCF DTTFRTNNNL ICAPFLGVNH HWKNISFGCA FLLDESTASF TWLFETFLES 300 MGNKQPVTIF TDENKAMEKA KAIEIVFPET RHLLSNWQIS KNATQHLGSL YADPEFKKHF 360 NKCFYDCFTE QELQHAWDDM IKMFNLESNS WLKMLYSLRE KWCPAFSSDA FSANIGSSQR 420 GENTNTIFHQ VSRKIVDLVS FVQHYEQKTK KMRFTELEED FRCKNAKPRL RVNSSIFKHA 480 ATEYTVKMYS FFENELMSIF GVRMVEVGND GNQYIYEAVE EGYQRVFMIQ YNSTTSTVSC 540 SCKLFESMGL LCRHALKVLD SKNFTSIPTQ YIVKRWTREA KKGIVASNKF SKSSDGKANS 600 SQSLRLSELM HEGTNVFSIG SLCDSGKRIV KQKLAETIKL LESDEDTTYM LGNLSKVDDQ 660 SVRDMSLDNG SVESPGCDS

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MDSDSQKESL EKSDNDEVFG EIDELRVGME VSDEAEAYQL CNTYAFNKGF SIRKGHLRRD  60
SQNNVRQREY TCSKEGFQVD EDLCEARKVR RLDTRTGCKA VIRFNVENGV WKLSYINPIH  120
NHEFARPEER QFLRSGRNIP SVRATILGSS KVDGSIRPAK LQSYSGKEFG SAENVGVSNK  180
DSHNCLQRGK DEWIAGDGQS LINYFKLKQM EDPSFFYSVQ VDQFNRITNY FWRDGRSKLD  240
YDCFADVVCF DTTFRTNNNL ICAPFLGVNH HWKNISFGCA FLLDESTASF TWLFETFLES  300
MGNKQPVTIF TDENKAMEKA KAIEIVFPET RHLLSNWQIS KNATQHLGSL YADPEFKKHF  360
NKCFYDCFTE QELQHAWDDM IKMFNLESNS WLKMLYSLRE KWCPAFSSDA FSANIGSSQR  420
GENTNTIFHQ VSRKIVDLVS FVQHYEQKTK KMRFTELEED FRCKNAKPRL RVNSSIFKHA  480
ATEYTVKMYS FFENELMSIF GVRMVEVGND GNQYIYEAVE EGYQRVFMIQ YNSTTSTVSC  540
SCKLFESMGL LCRHALKVLD SKNFTSIPTQ YIVKRWTREA KKGIVASNKF SKSSDGKANS  600
SQSLRLSELM HEGTNVFSIG SLCDSGKRIV KQKLAETIKL LESDEDTTYM LGNLSKVDDQ  660
SVRDMSLDNG SVESPGCDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1 family protein