PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026186.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 579aa MW: 64833.2 Da PI: 7.7302

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026186.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.8	2.2e-16	13	53	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r+vtf kRrng+lKKA L +LCd++v+ i++ ++ PCP026186.1 13 IPNESSRKVTFRKRRNGLLKKAGDLKTLCDVKVCTIVYEKK 53 789**********************************9754 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MGRRKSKLPL DLIPNESSRK VTFRKRRNGL LKKAGDLKTL CDVKVCTIVY EKKSKGKLST 60 AATFPKEFKD VKEIIDKYKS NSSKVKRVQS LGDFYATQTV QVKKEIGKLR GKICEEKYPA 120 WDDRFNAFSA EQMLDLLRNL ENKIVAAHDM HSTMKESKQI VVQEIIPPMA MFQSNQEYSQ 180 MLGLSDQKPS YCSMMMNDDW TQFASTSQTN SNIQYTPSAI ASNSNCKTST WEHDQIFNNN 240 YISAAYGNMD DNATFYNHTQ QQPCMYDSIF SSAASQQQQQ QAVVPSVENP NPIEALPLST 300 VLYEYDHPPL SMTMQPSYLE CPISASASAS SSGYDQQFGA SQSQNTASIT NPMAAIAAGL 360 ASWSSSKPSL IPSQHQISSP SSSPNKFDAK PWSLSMTSSL NEDIKIQYPI SATKQCPNTQ 420 KHLNATLRSP RGFGPSPRKK KTITEKPKKT RNNDSDDDDD DEDEDEDEEE GEEGVIPEVV 480 TNRMIGRMGF TVGLPLFLGL LFFPFFYYLK VGLKIDVPTW VPFIVSFVFF GTALLGVSYG 540 IVSSSWDPMR EGSLLGWTEA QKNWPVFWRS LRGGGSKKD

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MGRRKSKLPL DLIPNESSRK VTFRKRRNGL LKKAGDLKTL CDVKVCTIVY EKKSKGKLST  60
AATFPKEFKD VKEIIDKYKS NSSKVKRVQS LGDFYATQTV QVKKEIGKLR GKICEEKYPA  120
WDDRFNAFSA EQMLDLLRNL ENKIVAAHDM HSTMKESKQI VVQEIIPPMA MFQSNQEYSQ  180
MLGLSDQKPS YCSMMMNDDW TQFASTSQTN SNIQYTPSAI ASNSNCKTST WEHDQIFNNN  240
YISAAYGNMD DNATFYNHTQ QQPCMYDSIF SSAASQQQQQ QAVVPSVENP NPIEALPLST  300
VLYEYDHPPL SMTMQPSYLE CPISASASAS SSGYDQQFGA SQSQNTASIT NPMAAIAAGL  360
ASWSSSKPSL IPSQHQISSP SSSPNKFDAK PWSLSMTSSL NEDIKIQYPI SATKQCPNTQ  420
KHLNATLRSP RGFGPSPRKK KTITEKPKKT RNNDSDDDDD DEDEDEDEEE GEEGVIPEVV  480
TNRMIGRMGF TVGLPLFLGL LFFPFFYYLK VGLKIDVPTW VPFIVSFVFF GTALLGVSYG  540
IVSSSWDPMR EGSLLGWTEA QKNWPVFWRS LRGGGSKKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	55	RKRRNGLLKKAGDLKTLCDVKVCTIVYEKKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	2e-15	M-type_MADS family protein