PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026077.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 508aa MW: 56071.7 Da PI: 8.4865

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026077.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	344	366	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H PCP026077.1 344 FECTTCNKVFRSYQALGGHRASH 366 89**********99999998887 PP
2	zf-C2H2	11.2	0.0011	415	437	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H PCP026077.1 415 HPCPICYRVFPSGQALGGHKRSH 437 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MEEDQELKYV CKFCTKSFPC GRSLGGHMKS HLTNHSPETE EKLNSGRVKP SSGNNGGSDF 60 GGGPHQQPGY DLRENPKKTL RLADLSEETS FLLDKFCREC GKGFQSWKAL FGHMKCHSEK 120 ERVSIESFEE HEGSWTSQSD NETPTAAAPN RRRRSGRRRT RYMGATTSSS NFSIANASVP 180 ATTTSSVSET EQEQEEVAMC LMMLSRDSSH WGGLKLVPHN SPDDNSGFSD SPSSVRTIAD 240 IKGKIDETLK LKNKLTKKVL EPRDFESLAV LEGRKSKFCS SDGGFSKNDK LGSNKYNSSK 300 RKIREACDFE LRSDKTPKKS NTSRADALDS EVVVCKSAQK RSKFECTTCN KVFRSYQALG 360 GHRASHKKIK GCFASKIESS ENTMETDISP ESCCNNENPI EKEIAESSAK STKGHPCPIC 420 YRVFPSGQAL GGHKRSHLIG EAKITTQTLV IQKPAAPEVR EFLDLNLPAP VEEESSSNHD 480 AAAVAFKPWW VGRSSHKHEA ALVGLISN

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MEEDQELKYV CKFCTKSFPC GRSLGGHMKS HLTNHSPETE EKLNSGRVKP SSGNNGGSDF  60
GGGPHQQPGY DLRENPKKTL RLADLSEETS FLLDKFCREC GKGFQSWKAL FGHMKCHSEK  120
ERVSIESFEE HEGSWTSQSD NETPTAAAPN RRRRSGRRRT RYMGATTSSS NFSIANASVP  180
ATTTSSVSET EQEQEEVAMC LMMLSRDSSH WGGLKLVPHN SPDDNSGFSD SPSSVRTIAD  240
IKGKIDETLK LKNKLTKKVL EPRDFESLAV LEGRKSKFCS SDGGFSKNDK LGSNKYNSSK  300
RKIREACDFE LRSDKTPKKS NTSRADALDS EVVVCKSAQK RSKFECTTCN KVFRSYQALG  360
GHRASHKKIK GCFASKIESS ENTMETDISP ESCCNNENPI EKEIAESSAK STKGHPCPIC  420
YRVFPSGQAL GGHKRSHLIG EAKITTQTLV IQKPAAPEVR EFLDLNLPAP VEEESSSNHD  480
AAAVAFKPWW VGRSSHKHEA ALVGLISN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	1e-29	C2H2 family protein