PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025855.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 1742aa MW: 194010 Da PI: 8.2698

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025855.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.4	4.7e-31	1662	1720	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk++ +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ PCP025855.1 1662 LDDGFRWRKYGQKAVKNTLCPRSYYRCTHNTCSVKKQVQRLSNDTSIVVTTYEGVHNHP 1720 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1742 aa Download sequence
MCTLERKGNV FILTLTGPGE HRLNPTFIDS IRSALNQIRT AVTTTATSSS PSALITTAHG 60 KFFSNGYDLS WAKSSESRLE LMRSKVRSLV ADLISLPMPT IAAVSGHASA AGFILARSHD 120 YLLMRRDRGF IYMSELDIEL LLPAWLAALF DRKISSPAAR RDLLLRADKM TADVAVANGI 180 IDSAHDSAEE TVEAAVRLGE ELVSRKWNGH VYAQIRKDLL SEVLDEIRVY NTGSRARLFC 240 SNVRVELSTE QKKRSFSSAV RGEVLRDSGG DPTPAPDVFG LQQSGSEPRE FEASVGRRWR 300 RRRRRVSRLR SSLLKKPPEP LRRAVADCLS ASAAATSHHG TTSSTVLLSE ASRILRDYLA 360 APSTMDLSYN VILEHTIAER ERSPAVVARC VALLKRYLLR YKPSEETLLQ IDRFCVNTIV 420 ECDIGPNRRL SPRSQSFGSI TSTISTASTN VVPLSVPSFA SEALVKSLNY VRSLVSQHLP 480 KRSFHPAAFS GAPSATRQSL PSLSSLLSRS FNSQLSPAHS GEPLENKDAT TMSILNLSNI 540 GKIDGMGNLE YFALDVFKWR WLGEHQSSSL GTESDRVVNP QDMRTHRLLE VGAAALLVGD 600 KEAKMRGQPW KYFGTADMPY LDQLLQPSPV TAITDSATAR SHLRAITASK RTKSGPHQIW 660 DDSPVSTFRP RAKQLFQYRH YSEQQPLRLN PAEVCEVIAA VCSEASSQTA NVKTVSSRLT 720 NNYGKPSMDA AVSVLIKLVI DMYVLDSGTA APLTLSMLEE MLNSPRAACR NRAFDLILNL 780 GVHAHLLEPG VADNDSTIEE EYSQESYFDS ESKLATQGVG RSDSLIMGTS SAIDNFETWI 840 LNILYEILLF LVQIEEEEES VWASALSCLL YFVCDRGKIL RNRINGLDIR VPKALLEISR 900 KNSWAEVVHC KLISMLANMF YQVPEGINKA VSSTQLFLAE QVDLIGGIEF IFVEYSLAKS 960 REERRNLFLV LLDYALHQIN EICIATGVTE YSDDEIQPLV ALLNLADAPE AFYISVKLGL 1020 VGIGEILRSS ISDALSRYPN SERLNMLLDS VMEKLGATIS SFIHLDTEFS HMMQITKSYK 1080 SVDSIERAVL RNGVGMKAKL SWALLHSLLH SERIAYRRNA YVWLSDLLIA EISEERNSSI 1140 WSNIKTMQQK IAQADVHDSS VASDVPLPIW LMCGLLKSKH NSIRWGFLIV LERFLMRCKI 1200 LLNENKVQQS HGSDIGNVRK DSHLENANAV IDIMSSALSL VFQINETDRI NILKMCDILF 1260 SQLCLRAPSA NTTNFGDDAQ LGRVLSRMDG SKIVDEKESS RQDVCMEESS ARSGLSNNNP 1320 LDHETESMAA LLLRGQAIVP MQLVTRVPAA LFYWPLIQLA GAATDNIALG IAVGSKGRGN 1380 LPGAISDIRA TLLLLLIGKC TADSATFQDV DGEEFFRELL DDTDSRVAYY SSAFLLKARM 1440 LFRMMTEKPE KYQHMLQNLV VRAQQLKDYG GDSSEKKVLR AQVALEKFVA ISPVSVHYNA 1500 KRPRGKLSEK YTLYRIRISI FVQAFVIFYN AKRIDLCMFG GPSNRATSSS SPTYQFPPQN 1560 NLFTPSSSSL SINLFDNPHP PPDPHHHQVQ IPPDIDWISL LSGDQPAGDL LTTHNNHDQA 1620 GDRAEEIRGS NRRKGGASSR NYTRRSSRPR VAFHTRSTDD ILDDGFRWRK YGQKAVKNTL 1680 CPRSYYRCTH NTCSVKKQVQ RLSNDTSIVV TTYEGVHNHP SEELMETLTP LLKQMQFLSA 1740 RF

Sequence ? help Back to Top

Protein Sequence Length: 1742 aa Download sequence

MCTLERKGNV FILTLTGPGE HRLNPTFIDS IRSALNQIRT AVTTTATSSS PSALITTAHG  60
KFFSNGYDLS WAKSSESRLE LMRSKVRSLV ADLISLPMPT IAAVSGHASA AGFILARSHD  120
YLLMRRDRGF IYMSELDIEL LLPAWLAALF DRKISSPAAR RDLLLRADKM TADVAVANGI  180
IDSAHDSAEE TVEAAVRLGE ELVSRKWNGH VYAQIRKDLL SEVLDEIRVY NTGSRARLFC  240
SNVRVELSTE QKKRSFSSAV RGEVLRDSGG DPTPAPDVFG LQQSGSEPRE FEASVGRRWR  300
RRRRRVSRLR SSLLKKPPEP LRRAVADCLS ASAAATSHHG TTSSTVLLSE ASRILRDYLA  360
APSTMDLSYN VILEHTIAER ERSPAVVARC VALLKRYLLR YKPSEETLLQ IDRFCVNTIV  420
ECDIGPNRRL SPRSQSFGSI TSTISTASTN VVPLSVPSFA SEALVKSLNY VRSLVSQHLP  480
KRSFHPAAFS GAPSATRQSL PSLSSLLSRS FNSQLSPAHS GEPLENKDAT TMSILNLSNI  540
GKIDGMGNLE YFALDVFKWR WLGEHQSSSL GTESDRVVNP QDMRTHRLLE VGAAALLVGD  600
KEAKMRGQPW KYFGTADMPY LDQLLQPSPV TAITDSATAR SHLRAITASK RTKSGPHQIW  660
DDSPVSTFRP RAKQLFQYRH YSEQQPLRLN PAEVCEVIAA VCSEASSQTA NVKTVSSRLT  720
NNYGKPSMDA AVSVLIKLVI DMYVLDSGTA APLTLSMLEE MLNSPRAACR NRAFDLILNL  780
GVHAHLLEPG VADNDSTIEE EYSQESYFDS ESKLATQGVG RSDSLIMGTS SAIDNFETWI  840
LNILYEILLF LVQIEEEEES VWASALSCLL YFVCDRGKIL RNRINGLDIR VPKALLEISR  900
KNSWAEVVHC KLISMLANMF YQVPEGINKA VSSTQLFLAE QVDLIGGIEF IFVEYSLAKS  960
REERRNLFLV LLDYALHQIN EICIATGVTE YSDDEIQPLV ALLNLADAPE AFYISVKLGL  1020
VGIGEILRSS ISDALSRYPN SERLNMLLDS VMEKLGATIS SFIHLDTEFS HMMQITKSYK  1080
SVDSIERAVL RNGVGMKAKL SWALLHSLLH SERIAYRRNA YVWLSDLLIA EISEERNSSI  1140
WSNIKTMQQK IAQADVHDSS VASDVPLPIW LMCGLLKSKH NSIRWGFLIV LERFLMRCKI  1200
LLNENKVQQS HGSDIGNVRK DSHLENANAV IDIMSSALSL VFQINETDRI NILKMCDILF  1260
SQLCLRAPSA NTTNFGDDAQ LGRVLSRMDG SKIVDEKESS RQDVCMEESS ARSGLSNNNP  1320
LDHETESMAA LLLRGQAIVP MQLVTRVPAA LFYWPLIQLA GAATDNIALG IAVGSKGRGN  1380
LPGAISDIRA TLLLLLIGKC TADSATFQDV DGEEFFRELL DDTDSRVAYY SSAFLLKARM  1440
LFRMMTEKPE KYQHMLQNLV VRAQQLKDYG GDSSEKKVLR AQVALEKFVA ISPVSVHYNA  1500
KRPRGKLSEK YTLYRIRISI FVQAFVIFYN AKRIDLCMFG GPSNRATSSS SPTYQFPPQN  1560
NLFTPSSSSL SINLFDNPHP PPDPHHHQVQ IPPDIDWISL LSGDQPAGDL LTTHNNHDQA  1620
GDRAEEIRGS NRRKGGASSR NYTRRSSRPR VAFHTRSTDD ILDDGFRWRK YGQKAVKNTL  1680
CPRSYYRCTH NTCSVKKQVQ RLSNDTSIVV TTYEGVHNHP SEELMETLTP LLKQMQFLSA  1740
RF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	304	RRWRRRRR
2	297	305	RRWRRRRRR
3	300	305	RRRRRR
4	300	308	RRRRRRVSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	8e-48	WRKY family protein