PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025404.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 378aa MW: 42412.4 Da PI: 5.9733

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025404.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.4e-15	15	63	1	48
TSSS-HHHHHHHHHHHHH.TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkq.lGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdell++++ + +G g+W++ ++ g+ R++k+c++rw +yl PCP025404.1 15 KGPWSPEEDELLLNYISKnHGHGSWRSLPKLAGLQRCGKSCRLRWINYL 63 79************7637777**********************97 PP
2	Myb_DNA-binding	47.3	4.6e-15	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++ +lG++ W+tIa+ ++ gRt++++k+ w+++l PCP025404.1 69 RGPFNKDEEQLIIQLHGMLGNR-WATIASQLP-GRTDNEIKNLWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MGRTPCCDNK KDLKKGPWSP EEDELLLNYI SKNHGHGSWR SLPKLAGLQR CGKSCRLRWI 60 NYLRPEIKRG PFNKDEEQLI IQLHGMLGNR WATIASQLPG RTDNEIKNLW NTHLRKRLIA 120 MGIDPQTHEL LASNCLNHNA SASAATRHMA QWESARLEAE ARLSRESSLF SHAPEKSESD 180 HFLRLWNSNV GKSFRKLTSD KFVCQSPISQ ASSSTKCGLL SAVTTEVGNN LTGSSTMAGN 240 QNEDLAYRPF LINTEDVEYK PFQFNTEEEG YKLFQSNTEA GEFKICQSNT EDRMAGSVSS 300 CSNDLENSSD TALQLLLDYP INDDMSFLEN NADDYATNPS EVGAQFFHLT PSESGVETSL 360 YSNLLLEFLV VVLHKPSI

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MGRTPCCDNK KDLKKGPWSP EEDELLLNYI SKNHGHGSWR SLPKLAGLQR CGKSCRLRWI  60
NYLRPEIKRG PFNKDEEQLI IQLHGMLGNR WATIASQLPG RTDNEIKNLW NTHLRKRLIA  120
MGIDPQTHEL LASNCLNHNA SASAATRHMA QWESARLEAE ARLSRESSLF SHAPEKSESD  180
HFLRLWNSNV GKSFRKLTSD KFVCQSPISQ ASSSTKCGLL SAVTTEVGNN LTGSSTMAGN  240
QNEDLAYRPF LINTEDVEYK PFQFNTEEEG YKLFQSNTEA GEFKICQSNT EDRMAGSVSS  300
CSNDLENSSD TALQLLLDYP INDDMSFLEN NADDYATNPS EVGAQFFHLT PSESGVETSL  360
YSNLLLEFLV VVLHKPSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-117	MYB family protein