PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025136.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 389aa MW: 42668.1 Da PI: 6.5982

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025136.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl PCP025136.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPTKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.7e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l PCP025136.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PTKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKN DALLSSAYGH SKNVSNLSHM AQWESARLEA EARLVRESKL RSHNSSLLHQ 180 LTTTNPNTYV LVNSSSSCST SAQLQIKWPS SNPSNNNIDL ESSTSTLNYN SDQTNVNNAS 240 SSTVGSAIMQ PAMIEFVGCS GSSETKEECG DKEEDWKSHL SFTSLGLVHD HQTITMSMDA 300 GGAWTTATDH QVGNVVADMA AADQEGITNL LLNNSDEVHS LPDGDHGGDS DNGGGSGSGS 360 GTDYNEDHKH YWNSILNLVN SSPSESPLF

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PTKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLSSAYGH SKNVSNLSHM AQWESARLEA EARLVRESKL RSHNSSLLHQ  180
LTTTNPNTYV LVNSSSSCST SAQLQIKWPS SNPSNNNIDL ESSTSTLNYN SDQTNVNNAS  240
SSTVGSAIMQ PAMIEFVGCS GSSETKEECG DKEEDWKSHL SFTSLGLVHD HQTITMSMDA  300
GGAWTTATDH QVGNVVADMA AADQEGITNL LLNNSDEVHS LPDGDHGGDS DNGGGSGSGS  360
GTDYNEDHKH YWNSILNLVN SSPSESPLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-121	MYB family protein