PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP025109.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 552aa    MW: 61219.2 Da    PI: 6.4284
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP025109.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.14.8e-811625442374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl...fsevsPilkfsh 95 
                  ++lL  cA a++ g+ +++q+lL  l+elas +gd+++Rlaa+ + AL+++l++s+s+ +   ++s+++ +  s+e  +++k    f+evsP++ f +
  PCP025109.1 162 EQLLNPCASAITGGNSTRVQHLLFVLHELASVTGDANHRLAAHGLHALNQHLSSSSSSSAPNGSASAAPVTFtSTEPRFFQKSlmkFYEVSPWFAFPN 259
                  689**************************************************965554443333333322224443333333566************ PP

         GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnv 180
                   +aN+ Il+ +++e    +++Hi+D ++s+G+QWp+Ll+aL+ Rp ++pp ++iT+++ +e++              +  +rL +fA+ ++++++++ 
  PCP025109.1 260 NIANSSILQLIAEEfdrtRTLHIVDVGVSHGMQWPTLLEALTHRPgGPPPLVKITVIAGAENNqnrgtpfaVGPPGDNFSNRLLSFAKYMNINLQIKR 357
                  *****9998888777776999************************55566*******9888777778887777788999******************* PP

         GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleakl 275
                  l  + l++l+ + ++ +++E+l+V+++++lh+l    +++++er+e+Lk ++s++Pk v+++e+++++   n ++F+++f++ +ey + ++ds+++ +
  PCP025109.1 358 LDDQPLKTLNAQLIDASNDETLIVCVQFRLHQLN---HNTPDERTEFLKSLRSMEPKGVILSENNMECscnNCGDFATGFSRQVEYLWRFLDSTSVAF 452
                  9999*****************************8...77777889*******************9665446778********************9996 PP

         GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                      + r + Er++++ e+ ++++++g++    +e +ekW er++++GF    ++e+a +  ++llrk++ +++++v+e++g++ l Wk++p+ ++S 
  PCP025109.1 453 ----KGRESEERRVMEGEAAKALTNRGEM----NEGKEKWGERMRRVGFVGEVFGEDAIDGGRALLRKYDsNWEMKVDEKDGCVGLWWKGQPVSFCSL 542
                  ....77888888888888999**999999....9************************************9999************************ PP

         GRAS 373 Wr 374
                  W+
  PCP025109.1 543 WK 544
                  *8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    
MTTEQPEPNS TSDHILDWLE DSVTFFPSFW DDPYHSNDID GGLQWWDENH DLVHPTTNPT  60
CLNNPTGISI PTTTTGPPNP ANLNHPSPTD SSKKRKASPE EQHIDRKNHH GRPINPAVPG  120
NQSGEEVVVV PVKKSNGNKK GTAKGTGNNC NNGNSKEGRW AEQLLNPCAS AITGGNSTRV  180
QHLLFVLHEL ASVTGDANHR LAAHGLHALN QHLSSSSSSS APNGSASAAP VTFTSTEPRF  240
FQKSLMKFYE VSPWFAFPNN IANSSILQLI AEEFDRTRTL HIVDVGVSHG MQWPTLLEAL  300
THRPGGPPPL VKITVIAGAE NNQNRGTPFA VGPPGDNFSN RLLSFAKYMN INLQIKRLDD  360
QPLKTLNAQL IDASNDETLI VCVQFRLHQL NHNTPDERTE FLKSLRSMEP KGVILSENNM  420
ECSCNNCGDF ATGFSRQVEY LWRFLDSTSV AFKGRESEER RVMEGEAAKA LTNRGEMNEG  480
KEKWGERMRR VGFVGEVFGE DAIDGGRALL RKYDSNWEMK VDEKDGCVGL WWKGQPVSFC  540
SLWKPHEREG NN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-156GRAS family protein