PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025083.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 465aa MW: 50967.8 Da PI: 9.9422

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025083.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP025083.1 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.9	0.00034	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ PCP025083.1 82 WKCEKCSKKYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRLNK EVKKKVYICP EKTCVHHDPS 60 RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK 120 DSFITHRAFC DALTEESARL TTSSVIGVHS NLNFGNDAML NNPMMNNSQA VVQDVSQISM 180 QYGQGLMRQD FNGLDQLHQH EKPRLSLWLN QQATSNSNQV NLMDDMQANP NHPLYVTSSS 240 SNAFPEMVQM PSSSNNVNLF GSSNSMTTFR ASTSGANLSL SPGQESGTSK LIGKNSNLVG 300 SGTSKPPAAP MSATALLQKA AQLGSTRSSN NQGSSLGVNV MSSSSSSNTL RGFSNLNQNR 360 SNELHQVVQN AHQSDGGSAN LSSLTSSSSN TSATTLEQLM NTIQRGPSNI GSIDHQNSLT 420 RDFLGMGGAG GGEHIDQLSH TNRQIFFPQD LAKFASSMSQ FTRNH

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRLNK EVKKKVYICP EKTCVHHDPS  60
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  120
DSFITHRAFC DALTEESARL TTSSVIGVHS NLNFGNDAML NNPMMNNSQA VVQDVSQISM  180
QYGQGLMRQD FNGLDQLHQH EKPRLSLWLN QQATSNSNQV NLMDDMQANP NHPLYVTSSS  240
SNAFPEMVQM PSSSNNVNLF GSSNSMTTFR ASTSGANLSL SPGQESGTSK LIGKNSNLVG  300
SGTSKPPAAP MSATALLQKA AQLGSTRSSN NQGSSLGVNV MSSSSSSNTL RGFSNLNQNR  360
SNELHQVVQN AHQSDGGSAN LSSLTSSSSN TSATTLEQLM NTIQRGPSNI GSIDHQNSLT  420
RDFLGMGGAG GGEHIDQLSH TNRQIFFPQD LAKFASSMSQ FTRNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	2e-89	C2H2 family protein