PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025073.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRF

Protein Properties

Length: 1228aa MW: 138454 Da PI: 6.9083

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025073.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.5	2.4e-23	890	933	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ ++k+CErH+hrg++rsrk++e PCP025073.1 890 DPEPGRCRRTDGKKWRCSKEAFLDSKYCERHMHRGKNRSRKPVE 933 79***************************************987 PP
2	QLQ	32.6	2.5e-12	828	854	10	36
QLQ 10 lLksQilAyKyLaanqPvPpeLlqaiq 36 +L++Q+l+yKy++++ +Pp+Ll+ ++ PCP025073.1 828 ELEHQALIYKYMVSGISIPPDLLFSLK 854 9**********************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 1228 aa Download sequence
MNKDEETSSP SWGASFFAQT EDVARAVAAV AASATAAHSP RPSAVYSSNE DGGGGSPLQR 60 LQRRVTKVLK GFQHPPEVKR GTYNPEVLTS QKRQWALQYL DHKSLKQPTR LFESMVVMGL 120 HPNCDIQALQ RQYIGRKSDG PGRFNSQNHS RVEPNIEPQV LFVYPPEKQL PLQYKDLLSF 180 CFPGGIEVHA VERTPSMSEL NEILLGQLYD HDDAYFQEHF KRSDLSFVFR LQVADDSTLY 240 GCCMLVEEVV QKPSGLLSMI AEKHPSRPSL SRHILTTHRC YCILSRVPAF ELHFGVLNSI 300 FTEERLERLT QGIDLLDLES PKDYDSGENF EDTTEETSDG VSLSSRTEED MRNGTTEFCQ 360 SGRFAENGSH LDHQMVDGNF NLLKRRVSGN VVVPVEPETE IVSCKREPGG VNAEVYVDDF 420 STNKQAVERR LPNAVLPLLR FYQYESSDSS CSFQGSPCED RNFRSDVDFT VTDEASFSGQ 480 DDSDLIDILE WAKANNHGSL QIISEYYQLR CPARGTTVKF HPLDHLHPLE YHRPKVNILR 540 TAGSTIDLRS CSTSLEFAEA QSAFLVEEEA TALSVWAIAC ICGSLRLENV LTLFAGALLE 600 KQIVIICSNL GILSASVLSI IPLIRPYQWQ SLLMPVLPND MLDFLDAPVP YIVGVKNKYE 660 VQSKLSNTIV VDANKNQVKS PTIPQLPQHK ELFSSLSPYH AKLVGESFLG RKRPVYECTE 720 EQIVAAKGFL GVLRTYLDSL CSNLRSHTIT NVQSNDDKVS LLLKESFIDS FPSRDRPFMK 780 SCQTQELPQL QQLRCRVRSN REDSAAKWSL KINIPISNXX XXXXXXXELE HQALIYKYMV 840 SGISIPPDLL FSLKRSSCSL DSPLPPKIFS HHPPHIGWNC FQMGLGRKID PEPGRCRRTD 900 GKKWRCSKEA FLDSKYCERH MHRGKNRSRK PVEVLKTSKS SNTSTITTKI NTCSASPSPA 960 AFHSLSSSLS SLSSSDSHPY PFLYHHHSPS PRPPGIGFPH QERNTTSLFL DSGSYPQPSS 1020 EYRPVDHSNV DEFGLSRLAR RCALCEFMPV GDSNVPVCDL CRLARAVNRY AYGMKEEVDE 1080 HAFFSEPSGT VRRFSGSSSL DDSWQFTPLT ISTSSSSKQR SCSAFQSDQQ DQQLQSIKHQ 1140 KQDHHHQQQQ HYYAMDRNEG SQKTIHRFFD EWPPKDKDSW LDLDDKSSNS GSVSTTRLSI 1200 SIPTSGHDFP VFTSRHHNSK LTYKCIYL

Sequence ? help Back to Top

Protein Sequence Length: 1228 aa Download sequence

MNKDEETSSP SWGASFFAQT EDVARAVAAV AASATAAHSP RPSAVYSSNE DGGGGSPLQR  60
LQRRVTKVLK GFQHPPEVKR GTYNPEVLTS QKRQWALQYL DHKSLKQPTR LFESMVVMGL  120
HPNCDIQALQ RQYIGRKSDG PGRFNSQNHS RVEPNIEPQV LFVYPPEKQL PLQYKDLLSF  180
CFPGGIEVHA VERTPSMSEL NEILLGQLYD HDDAYFQEHF KRSDLSFVFR LQVADDSTLY  240
GCCMLVEEVV QKPSGLLSMI AEKHPSRPSL SRHILTTHRC YCILSRVPAF ELHFGVLNSI  300
FTEERLERLT QGIDLLDLES PKDYDSGENF EDTTEETSDG VSLSSRTEED MRNGTTEFCQ  360
SGRFAENGSH LDHQMVDGNF NLLKRRVSGN VVVPVEPETE IVSCKREPGG VNAEVYVDDF  420
STNKQAVERR LPNAVLPLLR FYQYESSDSS CSFQGSPCED RNFRSDVDFT VTDEASFSGQ  480
DDSDLIDILE WAKANNHGSL QIISEYYQLR CPARGTTVKF HPLDHLHPLE YHRPKVNILR  540
TAGSTIDLRS CSTSLEFAEA QSAFLVEEEA TALSVWAIAC ICGSLRLENV LTLFAGALLE  600
KQIVIICSNL GILSASVLSI IPLIRPYQWQ SLLMPVLPND MLDFLDAPVP YIVGVKNKYE  660
VQSKLSNTIV VDANKNQVKS PTIPQLPQHK ELFSSLSPYH AKLVGESFLG RKRPVYECTE  720
EQIVAAKGFL GVLRTYLDSL CSNLRSHTIT NVQSNDDKVS LLLKESFIDS FPSRDRPFMK  780
SCQTQELPQL QQLRCRVRSN REDSAAKWSL KINIPISNXX XXXXXXXELE HQALIYKYMV  840
SGISIPPDLL FSLKRSSCSL DSPLPPKIFS HHPPHIGWNC FQMGLGRKID PEPGRCRRTD  900
GKKWRCSKEA FLDSKYCERH MHRGKNRSRK PVEVLKTSKS SNTSTITTKI NTCSASPSPA  960
AFHSLSSSLS SLSSSDSHPY PFLYHHHSPS PRPPGIGFPH QERNTTSLFL DSGSYPQPSS  1020
EYRPVDHSNV DEFGLSRLAR RCALCEFMPV GDSNVPVCDL CRLARAVNRY AYGMKEEVDE  1080
HAFFSEPSGT VRRFSGSSSL DDSWQFTPLT ISTSSSSKQR SCSAFQSDQQ DQQLQSIKHQ  1140
KQDHHHQQQQ HYYAMDRNEG SQKTIHRFFD EWPPKDKDSW LDLDDKSSNS GSVSTTRLSI  1200
SIPTSGHDFP VFTSRHHNSK LTYKCIYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-43	GRF family protein