PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024889.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

RAV

Protein Properties

Length: 406aa MW: 44056.5 Da PI: 9.4126

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024889.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.1	1e-13	76	124	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g PCP024889.1 76 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 124 89**9888.8*****3.....5******99***********98 PP
2	B3	94.1	9.4e-30	213	322	1	96
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h ++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v F++ PCP024889.1 213 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgsaatvtvsASSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLMAGDIVSFQR 310 89***********************999877766666544444999***********************************************8 PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 + +++l++ + PCP024889.1 311 STGPDKQLYIDW 322 766777777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MDGISSTEES TSSDSISISP LHHIVTRVDP LAKSAPQVAS LCRVGSGASS VILDPELSSG 60 GGTGGVEAES RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDVAAQ 120 RFRGRDAVTN FKLPSAEPIS SSDEENDDVE AAFLSSHSKS EIVDMLRKHT YNDELEQSKR 180 NNCAYGKRSR TNGPLGLFGT DNSRVPKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKHFP 240 LQSGSAATVT VSASSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL 300 MAGDIVSFQR STGPDKQLYI DWKARMSVNN NNNNGSSPVQ VGPIPMVRLF GVNIFKIPGS 360 SGAGSVDAAA AAAIGGGCNN NIGKRMREME LLELEFGKKP RIIGAL

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MDGISSTEES TSSDSISISP LHHIVTRVDP LAKSAPQVAS LCRVGSGASS VILDPELSSG  60
GGTGGVEAES RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDVAAQ  120
RFRGRDAVTN FKLPSAEPIS SSDEENDDVE AAFLSSHSKS EIVDMLRKHT YNDELEQSKR  180
NNCAYGKRSR TNGPLGLFGT DNSRVPKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKHFP  240
LQSGSAATVT VSASSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL  300
MAGDIVSFQR STGPDKQLYI DWKARMSVNN NNNNGSSPVQ VGPIPMVRLF GVNIFKIPGS  360
SGAGSVDAAA AAAIGGGCNN NIGKRMREME LLELEFGKKP RIIGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-135	RAV family protein