PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024629.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 974aa MW: 111621 Da PI: 8.5854

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024629.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.2	1.5e-19	244	318	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+v+ + ++HnH l PCP024629.1 244 DFYTLYAARMGFKVRTGQLYRSRTDGSVSSRRFVCSKEGFQIS--------------SRTGCPALIRVQRRDSGKWVVDLFLKDHNHGL 318 6*************************************765..............699*************************98 PP
2	FAR1	65.1	1.9e-20	399	474	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF++r+ + +sk +g+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++++ +HnHe+ PCP024629.1 399 QFYHAYAENAGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHP--------------SRVGCGAYMRIKRQDSGRWVVDRFDINHNHEFE 474 6*************************************999..............4899************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 974 aa Download sequence
MVEAKARLPY SLEQARGQRR RRLCRRRRRR QRARPERDPP SAVAADPAPH KTEVLDGKVH 60 ISAFPPVVLR IVNRPHSFVL ALVPLKRGNH SGGDTKGPAS TCHPIFFSCA STKSGWCCGC 120 EPRHECCGEG GRRMKKKTRE TVSQREKREM VVEEGWGTGK GLGTVEEKKK KEMGMESSST 180 HFTNIRSLDT DCKIEDSGNN LVIEAYPLGM MPPMNAVDTE DEGESGVLEP YVGLEFDSAD 240 VARDFYTLYA ARMGFKVRTG QLYRSRTDGS VSSRRFVCSK EGFQISSRTG CPALIRVQRR 300 DSGKWVVDLF LKDHNHGLGS STEENHSPIF QKKSSMPTNS VVEVSHRPKV KLIKAIEDKP 360 PCPSGVITAK RLKRGGDEMQ SEVDLSAGLE FNSANEAYQF YHAYAENAGF RIRIGQLFRS 420 KLDGSITSRR FVCSKEGFQH PSRVGCGAYM RIKRQDSGRW VVDRFDINHN HEFESHLEVQ 480 KKNLFSSKKF IEEEIGGLEI EDIVDINNGN LVKRHRENHI GSDWYSVLFD YFQTKQAEDT 540 GFFYAVEVDN GNCMSIFWAD GRSRFSCSQF GDAIIFDTSY RKSIYLVPFA AFIGINHHKQ 600 PVLLGXXXXX XXXXLLGCAL VADESEKSFY WLFQTWLRAM SGRRPLSIIA DQDDVIQQAI 660 MQVLPGTHHR FSLWQIKAKE SEHLSVMNGS FKYEYEKCIY QCQTANEFET AWNALLSRYG 720 LKDNAWLKAM YEKRRSWVPL YLRATFFAGI PFNESIESFF GAHFNAQTPL KEFVSQYERG 780 LERRREEEIK EDFNSFNLKP YLQTKEPLEE QCRRLYTLNT FRVFQKELLQ SYSYLGFKIY 840 DEGAIIRYLV RKCGNDDEKS IVTVGAAIPE VGCSCRMFEF EGILCRHVLR VFQILDIKEV 900 PHCYILRRWT RNAEYGIPCE SELGGNPQEL KALMVWSLRE AACKYIEAGA TSLEKHKLAY 960 EIMQEGGRKL CWQR

Sequence ? help Back to Top

Protein Sequence Length: 974 aa Download sequence

MVEAKARLPY SLEQARGQRR RRLCRRRRRR QRARPERDPP SAVAADPAPH KTEVLDGKVH  60
ISAFPPVVLR IVNRPHSFVL ALVPLKRGNH SGGDTKGPAS TCHPIFFSCA STKSGWCCGC  120
EPRHECCGEG GRRMKKKTRE TVSQREKREM VVEEGWGTGK GLGTVEEKKK KEMGMESSST  180
HFTNIRSLDT DCKIEDSGNN LVIEAYPLGM MPPMNAVDTE DEGESGVLEP YVGLEFDSAD  240
VARDFYTLYA ARMGFKVRTG QLYRSRTDGS VSSRRFVCSK EGFQISSRTG CPALIRVQRR  300
DSGKWVVDLF LKDHNHGLGS STEENHSPIF QKKSSMPTNS VVEVSHRPKV KLIKAIEDKP  360
PCPSGVITAK RLKRGGDEMQ SEVDLSAGLE FNSANEAYQF YHAYAENAGF RIRIGQLFRS  420
KLDGSITSRR FVCSKEGFQH PSRVGCGAYM RIKRQDSGRW VVDRFDINHN HEFESHLEVQ  480
KKNLFSSKKF IEEEIGGLEI EDIVDINNGN LVKRHRENHI GSDWYSVLFD YFQTKQAEDT  540
GFFYAVEVDN GNCMSIFWAD GRSRFSCSQF GDAIIFDTSY RKSIYLVPFA AFIGINHHKQ  600
PVLLGXXXXX XXXXLLGCAL VADESEKSFY WLFQTWLRAM SGRRPLSIIA DQDDVIQQAI  660
MQVLPGTHHR FSLWQIKAKE SEHLSVMNGS FKYEYEKCIY QCQTANEFET AWNALLSRYG  720
LKDNAWLKAM YEKRRSWVPL YLRATFFAGI PFNESIESFF GAHFNAQTPL KEFVSQYERG  780
LERRREEEIK EDFNSFNLKP YLQTKEPLEE QCRRLYTLNT FRVFQKELLQ SYSYLGFKIY  840
DEGAIIRYLV RKCGNDDEKS IVTVGAAIPE VGCSCRMFEF EGILCRHVLR VFQILDIKEV  900
PHCYILRRWT RNAEYGIPCE SELGGNPQEL KALMVWSLRE AACKYIEAGA TSLEKHKLAY  960
EIMQEGGRKL CWQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	28	RRLCRRRR
2	21	30	RRLCRRRRRR
3	22	31	RRLCRRRRRR
4	25	30	RRRRRR
5	25	32	RRRRRRQR
6	132	171	RRMKKKTRETVSQREKREMVVEEGWGTGKGLGTVEEKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1 family protein